Raoultella ornithinolytica S12: TE10_04415
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Entry
TE10_04415 CDS
T03629
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TE10_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ron03019
]
TE10_04415
03016 Transfer RNA biogenesis [BR:
ron03016
]
TE10_04415
Enzymes [BR:
ron01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TE10_04415
Messenger RNA biogenesis [BR:
ron03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TE10_04415
Transfer RNA biogenesis [BR:
ron03016
]
Prokaryotic type
tRNA degradation factors
TE10_04415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
YqfQ
Motif
Other DBs
NCBI-ProteinID:
AJF71344
LinkDB
All DBs
Position
946064..948511
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AA seq
815 aa
AA seq
DB search
MSQDPFQDREAEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGDEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGVVIGHRDGFGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYTWPPE
VEKQVSVLKEQVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDGELREQYAPLVKHIEELHTLYKVLDSA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKALEP
ALFRIHDKPTTEAITAFRTVLAELGLELPGGNKPEPRDYAELLTSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGAHCSMAERRADEATREVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKSNAGKPSGRRRQAGKQVNFEPDSAFRKEKGKSQPQA
AQPKGEKKAKKPSTKTQKIAAATKAKRAAKKKTAE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaccgcgaagctgaaaagtatgcgaatccaatccctagc
cgggaatttatcctcgatcatttagcaaaacgtgaaaaaccggccagccgagacgagctg
gcgatagaactgaatatcgaaggcgatgagcagttagaagggctacgccgccgcctgcgc
gccatggagcgcgacgggcagctggtgtttacccgccgtcagtgctacgccctgccggag
cgtcttgacctgctcaaaggcgtggttatcggccatcgcgatggctttggcttcctgcgc
gtcgaggggcgtaaagacgacctgtacctgtcgtctgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgcggaccgtaaaggccgccgcgaagcgcgt
attgtgcgggtgctggtgccaaaaaccagccagatcgtcggccgctacttcaccgacgcc
ggcgtgggcttcgtggtccctgacgacagccgcctgagctttgatatcctgatcccgcct
gaagaagtcatgggcgcgcggatgggctttgtggtggtcgttgaactgacccagcgcccg
acccgtcgcacgaaagcggtgggcaaaatcgttgaggtgctgggcgataacatgggcacc
agcatggcggtcgatatggcgctgcgcacccatgaaatcccttacacctggccaccagag
gtggaaaaacaggtctccgtgctcaaagagcaggtgccggaagaggcgaaaatcggccgc
gttgatttacgcgatctgccgctggtcaccatcgatggtgaggacgcccgcgactttgat
gacgcggtttactgcgagaagaaacgcggcggcggctggcgcctgtgggtcgccattgcc
gacgtaagctactacgtgcgtcccggtacgccgctggacggcgaagcgcgcagccgcggc
acctcggtctacttcccttcgcaggtggtgccgatgctgccggaagtgctctctaacggc
ctgtgctcgctgaacccgcaggtcgatcgcctgtgcatggtttgcgaaatgacgatttcg
tcaaaaggccgcctgaccggctacaaattctatgaagcggtaatgagctcgcacgcgcgc
ctgacctataccaaggtatggcatatgctgcagggcgacggcgagctgcgtgagcagtac
gcgccgctggtgaagcatatcgaagagctgcacaccctttacaaagtcctcgatagcgcg
cgcgaagaacgcggcggcatctcctttgaaagtgaagaagcgaagttcatctttaacgct
gaacgccgcatcgagcgtattgagcagacccagcgtaacgacgcccataagcttatcgaa
gagtgcatgattctggcgaacatctccgccgctcgcttcgttgagaaggcgctggagccg
gccctgttccgtatccacgataagccgaccactgaagcgatcaccgctttccgcacggtc
ctggcggagctcggtctggagctgcctggtggcaacaagccggagccgcgcgactacgcc
gagctgctgacctccatcgccgatcgtcctgaccacgagatgctgcaaaccatgctgctg
cgctcgatgaagcaggcggtctacgatccggaaaaccgcggccactttggcctggcgctg
cagtcctacgcgcacttcacctcgcctatccgccgctatcctgacctgtcgctgcaccgc
gccattaagtatctgctggcgaaagagcaggggcacaaaggcaacagcactgaaaccggc
ggctggcactacagcatggaagagatgctgcagctgggcgcgcactgttcgatggccgaa
cgtcgtgccgacgaagcgacccgcgaggtctctgactggctgaagtgtgactttatgctg
gatcaggtgggcaacgtctttaagggcgtgattgccagcgtcaccggctttggcttcttc
gtccgcctggacgagctgtttatcgacggcctggtgcacgtgtcatctctggataacgac
tactaccgctttgaccaggtcgggcagcgtctgatcggcgagtccggcggtcagacctat
cgactgggcgatcgcgtggaagtccgcgtggaagcggtcaatatggacgagcgcaaaatc
gacttctcgctgatctccagcgaacgcgccccgcgcaacgtcggcaagaccgagcgtgag
aaggcgaaaaagtcgaacgccggcaaaccttccgggcgtcgtcgccaggccggtaagcag
gtaaacttcgagccggatagcgccttccgcaaagagaaaggcaagtctcagccccaggct
gcccagcctaaaggcgagaaaaaagcgaagaagccgtcgaccaaaacacagaaaatagct
gccgcaaccaaagcgaagcgcgcggcgaaaaagaaaaccgctgagtaa
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