Raoultella ornithinolytica S12: TE10_06730
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Entry
TE10_06730 CDS
T03629
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03030
DNA replication
ron03430
Mismatch repair
ron03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TE10_06730 (dnaE)
03430 Mismatch repair
TE10_06730 (dnaE)
03440 Homologous recombination
TE10_06730 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ron03032
]
TE10_06730 (dnaE)
03400 DNA repair and recombination proteins [BR:
ron03400
]
TE10_06730 (dnaE)
Enzymes [BR:
ron01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TE10_06730 (dnaE)
DNA replication proteins [BR:
ron03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TE10_06730 (dnaE)
DNA repair and recombination proteins [BR:
ron03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TE10_06730 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AJF71781
LinkDB
All DBs
Position
1458697..1462179
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVQCDLLGDELTEITVLAADNAGYQNLTLLISRAYQRGYGALGPWIDRDW
LVEHQEGLILLSGARKGDVGVCMTRGNAALVEQCVDFYEEHFPNRYYLELIRTGRADEET
YLHAAVQLAEERGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFSDLPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMTTEDFLVLKSKEGL
EERLEFLFPDEAERKEKRPEYDERLEIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEEPLDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKNGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctcagggtgcacagcgactattccatgatcgatggg
ctggcgaaaaccgggccgctggtgaaaaaggcggccgcgttaggcatgccggcgctggcg
atcaccgattttaccaacctgtgcgggctggtgaagttctacggagcgggacacggagcc
gggatcaaaccgatcgtcggcgcggattttcacgtccagtgcgatctgctgggcgatgag
ctgaccgaaattaccgtcctggcggccgataacgccggctaccaaaacctcaccctgctg
atttcacgcgcctatcagcgcggttacggcgccctcgggccgtggatcgacagagactgg
ctggttgagcatcaggaagggctgattctgctctccggcgcgcgcaaaggcgacgtcggc
gtgtgcatgacgcgcggcaacgcggcgctggttgaacagtgcgtcgacttctacgaagag
cacttccccaatcgctactatctggagctgatccgcaccggtcgggcggacgaagagacc
tatctgcacgccgccgtccagctggcggaggagcgcgggctgccggtggtggcgacgaac
gacgtgcgcttcctcgagaccggcgacttcgacgcgcatgaaatccgcgtggcgatccat
gacggcttcaccctcgacgatccgaagcgcccgcgtaactattcgccgcagcagtatatg
cgcagcgaagatgagatgtgcgagctgttctccgatctccccgaggcgctggaaaatagc
gtagaaattgccaaacgctgtaacgtcaccgtgcgccttggcgaatacttcctgccgcag
ttcccgaccggcgagatgacgactgaagatttcctggtattgaaatcgaaagagggtctg
gaagagcgcctggaattcttgttccccgacgaagccgagcgtaaagagaagcgtccggaa
tatgatgaacgtctggagatcgagctgcaggttatcaaccagatgggcttccctggctac
ttcctgatcgtgatggaatttatccagtggtcgaaggataacggcgtgcccgttggtcct
ggacgaggctccggcgccggctcgctggtggcctacgcgctgaaaattaccgatctcgat
ccgctggagttcgatctgctgttcgaacgcttcctgaacccggagcgcgtgtcgatgccc
gactttgacgtcgacttctgcatggagaagcgcgatcaggttatcgagcacgttgcggac
atgtacggccgcgatgcggtatcgcagattattaccttcggtacgatggcggcaaaagcg
gttatccgcgacgttggccgcgtgctgggccatccgtatggcttcgtcgatcgcatctca
aaactggtgccgccggatccggggatgaccctggcgaaagcctttgaagccgaaccgcag
ctgccggaaatctacgaagctgacgaagaggtcaaagcgctgatcgatatggcgcgcaag
ctggaaggcgtcacgcgtaacgccggtaagcacgcgggcggggtagttatcgccccgacc
aaaatcaccgattttgccccgctgtactgcgatgaggccgggctgcatccggtcacccag
tttgataagaacgacgtggaatatgcggggctggtcaagtttgacttcctcggcctgcgt
acgctgacgatcatcaactgggcgctggagatgatcaacaagcggcgggccaagaacggc
gaagagccgctggatatcgccgccattccgctggaagataagaaaagttttgatatgctg
cagcgctcggaaaccaccgcggttttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgcagccggactgcttcgaagatatgatcgccctcgtggcgctgttccgtccc
ggtccgctgcaatcagggatggtggataactttatcgaccgtaagcacggccgggaggag
atctcctatccggacgtgcagtggcagcatgagtgtctgaagccggtgctggagccgacc
tacggcattatcctgtatcaggaacaggtcatgcagattgcgcaggagctttctggctat
acgctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaggagatg
gccaagcagcgcggcaccttcgaggaaggggcaaagaaaaacggcgttgatggcgagctg
gcgataaaaatcttcgacctggtggagaaattcgccggttacggatttaacaaatcgcac
tccgcggcctatgcgctggtctcctaccagacgctgtggctgaaggcacactacccggca
gagtttatggccgcggtcatgacggcggatatggacaacaccgagaaggtagttgggctg
gtggatgagtgctggcggatggggctgaaaatcctgccgcctgacattaactccggcctg
taccacttccacgttaatgacgagggtgaaatcgtctacggcattggggcaattaaaggc
gtcggcgaaggtccaatcgaagcgattatcgaagcgcgtaacgaaggcggctatttccgc
gagctcttcgacctttgcgcccgtaccgataccaaaaagctcaaccgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgcctcgggccgcatcgcgcagcgctgatgaat
tcgcttggcgacgccctgaaggccgccgatcagcacgcaaaagccgaggccattggccag
gccgacatgttcggcgtgctggcggaagagccggaacaaatcgagcaatcctacgctaac
tgccagccgtggccggagcaggtggtgctcgatggcgaaagggagactctggggctgtat
ctgaccggtcacccgatcaaccagtatttgaaagagatcgagcgctacgtaggcggcgtc
aggctcaaagacatgcatccgaccgatcgtggtaaagttaccacggcggcggggctcgtt
attgctgcgcgggtaatggtcaccaagcgcggcaatcgtatcggcatctgtactctggat
gaccgttccgggcgtctggaggtgatgttattcaccgacgctctggataaatatcagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgtgaagtgatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaactattccagtgcacctctattatcag
agggcggatgcgcgcgcgcggctgcgcttcggcgcaacatggcgcgtctctccgagcgat
cgtttactcaacgatctgcgtggccttatcggctcggagcaggtggaactggagtttgac
taa
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