Raoultella ornithinolytica S12: TE10_11315
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Entry
TE10_11315 CDS
T03629
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TE10_11315 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ron03019
]
TE10_11315 (rne)
03009 Ribosome biogenesis [BR:
ron03009
]
TE10_11315 (rne)
Enzymes [BR:
ron01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TE10_11315 (rne)
Messenger RNA biogenesis [BR:
ron03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TE10_11315 (rne)
Ribosome biogenesis [BR:
ron03009
]
Prokaryotic type
rRNA processing factors
TE10_11315 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJF72618
LinkDB
All DBs
Position
complement(2447984..2451364)
Genome browser
AA seq
1126 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEASDEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRAAVSAIETRQGDVRVIIVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPADEEPAERKRPEQPALATFVMPDAPPA
PAYEEPEAVAVAASAPTAAVASAPAQPGLISRFFGALKNIFSGTKEAKPAEVQEEKKVEE
KPERQQERRKPRTNNRRDRNDRRDNREGRDSRDNRENRDNRENRDNRDNRAERDNRTERA
DRDNRSENGEGRESRESREENRRNRREKQQQNVELREPRQATGDEAEKAKSRDEQQPRRE
RNRRRNNDDKRQAPLETVAVKVQDEPVVLQEAELEERVQNMPRRKPRQLAHKVRIESAVA
EVAVEAAEAVVEKAQPDVVVAPRTELAKVDLPAVVETHVEHEESNESRDANGMPRRSRRS
PRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKIWIRYPVARPNDQQQEEPQV
QAFVAETVAPAVVAEPAIAEQIVSEPAVAEVIAPIAADVAASEAEAPEAAAQVIASEPQA
APEEVVAETVAEAEVEVKAEAIAEPVIAAEPVIAAESATVDEEAVVEQPAAKPETAVVDA
EPAVQAEAPAEVEEAVAPQVVDQAPAAAPAPVAAVAPAPVAAAVIDTDRHATAPMTRAPA
PAYEPEAPRRSDWVRPSFAFDGKGSAGGHSATHQATAEPTRPQSVE
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgtattgaacctagcctggaggccgcatttgttgattac
ggcgccgagcgtcatggtttcctccctcttaaagaaattgcccgcgaatacttcccagcc
agctacaacgctcacggccgtcctaacattaaggatgtgctgcgtgaaggtcaggaagtt
attgtccagattgataaagaagaacgtggcaacaaaggcgccgcgctcaccacctttatc
agcctggcaggcagctatctggtactgatgccgaataacccgcgcgctggcggtatttcc
cgccgcatcgagggtgacgatcgcaccgagctgaaagaagcgctggccagcctcgagctg
ccggacggtatggggctaattgtacgcaccgcgggcgtcggcaaatctgccgaagcgctg
cagtgggaccttagcttccgcctgaagcactgggaagctatccagaaagccgcagaaagc
cgcccggcgccgttcctgattcaccaggaaagcaacgtcatcgtgcgcgcgttccgcgac
tacctgcgtcaggacatcggtgaaattcttatcgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactaccaaatcgaatcgcagatcgaatccgctttccag
cgtgaagttcgtctgccgtccggcggctctatcgttatcgatagcaccgaggcgttgacc
gcgatcgatatcaactccgcacgcgcaacccgcggcggcgacatcgaagaaaccgccttc
aacaccaaccttgaagcatccgatgagattgcccgccagctgcgtctgcgcgacctcggc
ggtctgatcgttatcgactttatcgatatgaccccggtacgccaccagcgcgcggtagaa
aaccgcctgcgcgaagccgtacgtcaggatcgcgcgcgcatccagatcagccatatttct
cgctttggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctcggcgaatccagc
catcacgtctgcccgcgctgtagcggcaccggcaccgtgcgcgataacgaatccctgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaggagaacacccaggaagttcac
gcgattgttcctgtgccaatcgcgtcctatctgctgaacgaaaaacgtgcggcggtaagc
gctatcgaaacccgtcagggcgacgtgcgcgttatcatcgtgccgaacgatcagatggaa
accccgcactattccgtgctgcgcgtgcgcaaaggcgaagagacctctaccctgagctat
ctgctgccgaagctgcatgaagaagagatggcgctgccagctgatgaagaaccggcggaa
cgtaaacgtccggaacagccggcactggcaaccttcgtcatgccggatgctccgcctgcg
ccggcatatgaagagcctgaagccgtcgccgtagccgccagcgcaccgacagcggccgtg
gcctcagcgccggcccagccgggcctgatctctcgcttctttggcgccttgaaaaatatc
ttctctggtacgaaagaagccaaaccggctgaagtccaggaagagaagaaagtcgaagag
aagccggaacgccagcaggaacgtcgtaaaccgcgtaccaataatcgccgcgatcgtaac
gatcgtcgtgacaaccgcgaaggccgtgatagtcgcgataaccgtgaaaatcgtgataac
cgcgagaatcgtgacaaccgcgacaaccgtgccgagcgcgataaccgtacagagcgtgct
gaccgcgataaccgcagcgaaaatggcgaaggccgtgagtctcgtgaatcccgcgaggag
aaccgccgtaaccgtcgtgagaagcagcagcagaacgtcgagctgcgcgaacctcgccag
gccaccggcgacgaagcggaaaaagcgaaatcccgtgacgagcagcagccgcgccgtgaa
cgtaaccgtcgtcgtaataatgacgataagcgtcaggcaccgctggaaaccgttgccgtt
aaggtacaggatgagccggttgttctgcaggaagctgagctggaagaacgcgttcagaac
atgccgcgtcgtaaacctcgccagctggcccacaaggttcgcatcgaatctgcggtagcg
gaagtcgccgtagaagcagctgaagccgtagttgagaaagcgcagccagacgttgttgtg
gctccgcgtactgaactggcgaaagttgacctgcctgcggtggttgagactcacgttgag
cacgaagagagcaacgaatcccgtgatgctaacggtatgccgcgccgctcccgtcgttcg
ccgcgccatctgcgcgtgagcggtcagcgtcgtcgtcgttaccgtgacgagcgttatccg
acccaatcaccgatgccgctgaccgtagcctgcgcgtcgccggaaatggcttcaggtaaa
atctggatccgttacccggtagcccgcccgaacgaccagcagcaggaagagccgcaggtt
caggcttttgttgccgaaaccgtcgcgccagctgtcgttgccgagccggctattgccgag
cagatcgttagcgaaccggccgttgcggaagtcatcgcaccgatcgcggctgacgtcgct
gccagcgaagccgaagcgccggaagcggctgcacaggttatcgccagcgaaccgcaggcg
gcgcctgaggaagtcgttgctgagaccgtagcagaagctgaagttgaggttaaagctgaa
gccatcgctgagccggttatcgctgctgagcctgtcattgccgctgagtctgcaaccgta
gacgaagaagccgtggttgagcagccggctgccaagcctgaaaccgccgtcgttgacgcc
gagcctgcagtgcaggcagaagcgccagctgaagtggaagaagctgtggcaccgcaggtc
gttgaccaggcaccggcagcagcaccggcccctgttgccgcggtagcacccgctcccgtc
gctgcagcggttatcgatactgaccgccacgctaccgcgccgatgacccgcgcaccggct
ccggcttacgaaccggaagcaccgcgtcgcagcgactgggttcgcccgtcgttcgcgttc
gacggcaaaggttctgccggcggtcatagcgcaactcatcaggctacggcggaaccaacc
cgtccacagtccgtcgagtaa
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