Raoultella ornithinolytica S12: TE10_11460
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Entry
TE10_11460 CDS
T03629
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TE10_11460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ron03400
]
TE10_11460
Enzymes [BR:
ron01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TE10_11460
DNA repair and recombination proteins [BR:
ron03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TE10_11460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJF72646
LinkDB
All DBs
Position
complement(2480645..2484091)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQYRYSLPVKPGDQRQLGELTGAACATLVAEMTERHDGPVILVAPDMQNALRLNDEIR
QFTDSMVIALADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
NYLHGHALVMKKGQRLSRDTLREQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSEQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQAAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFNEPLPPLFSYFPANTLIVNTGELEASAERFQSETH
ARFESRGVDPMRPLLPPELLWLRSDELFSELKKWPRVQLKTDRLAEKAAHTNLGYQKLPE
LAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKVAPKHILRLEEATG
SGRYLMIGAAEHGFIDGPRGLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAVKSGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAMLREILRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSEHELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGMIEFNEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLAERKTRMEWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacaatatcgatactcactgccggtcaaacccggcgatcagcggcagctcggc
gaactcaccggcgcggcctgcgcgaccctggtcgcagaaatgaccgagcgccacgacggc
ccggtgatcctcgtcgcccccgatatgcaaaacgccctgcgcctgaatgatgaaattcgg
cagtttaccgacagcatggtcatcgccctggcggactgggaaaccctgccctacgatagc
ttctcgccgcatcaggatattatctcctcccgtctggcgaccctttatcagctgccgacc
atgcagcgcggcgtgctgatcgtaccggtcagcacgctgatgcagcgcgtctgtccgcat
aactacctgcacggccacgcgctggtgatgaaaaaaggccagcgcctgtcgcgggatacc
ctgcgcgagcagctggatagcgcgggctatcgccacgtcgatcaggtcatggagcacggc
gaatatgcgacccgcggcgccctgctcgacctctacccgatgggcagcgagcagccgtat
cgcctcgatttcttcgatgatgagatagacagcctgcgcctgtttgacgttgacagccag
cgcacgctcgaagaggtggcggcgatcaatctgctgcccgcccacgaattcccgaccgat
caggccgccatcgagctgttccgcagccagtggcgcgatcgcttcgaggtcaagcgcgat
gccgagcatatctatcagcaggtcagcaaaggcaccctgcccaccggcatcgaatactgg
cagccgctgtttttcaacgagccgctgccgccgctgtttagctacttcccggcgaacacg
ctgatcgtcaataccggcgagctggaagccagcgccgaacgtttccagagcgaaactcac
gcccgctttgagagccggggcgttgatccaatgcgcccgctgctgccgccggagctgctc
tggctgcgcagcgatgagctgttcagcgagctgaaaaaatggccgcgcgtgcagttaaaa
accgaccgcctggcggagaaagcggcccataccaacctcggctatcagaagctgccggag
ctggcgattcaggcgcagaacaaagcgccgctggataacctgcgccgcttcctcgaatcc
tttagcgggccggttatcttctcggtcgagagcgagggccgtcgcgaagcgttgggcgaa
atgctggcgcgcattaaggttgcgccaaagcatatcctgcgtctcgaagaggcgaccggc
agcggccgctatctgatgattggcgccgccgagcacggctttatcgatggcccgcgcggc
ctggcgctgatttgtgaaagcgatctgctgggcgagcgcgtggcgcgccgacgccaggac
tcgcggcgcaccatcaaccccgataccctgattcgcaacctcgcggagctgcatatcggc
cagccggtggtgcatcttgagcacggcgtcggccgctatgcgggaatgaccaccctcgag
gccggcggcatcaagggtgaatacctgatgcttacctacgccaatgacgccaaactgtac
gtcccggtctcctcgctgcatctgattagccgctatgccggcggcgcggaggagagcgcc
ccgctgcacaagctcggcggcgacgcctgggcgcgagcgcggcaaaaagcggcggagaag
gtgcgcgacgtggcggcggagctgctggatatttatgcacagcgcgcggtcaaatccggg
tttgccttcaagcacgatcgcgaacagtatcagctcttttgcgacggcttcccctttgaa
accacccccgatcaggcccaggccatcaacgcggtgctaagcgatatgtgccagccgctg
gcgatggatcgtctggtctgcggcgacgtgggctttggtaaaaccgaagttgccatgcgc
gccgccttcctggcggtagaaaaccataagcaggtggcggtgctggtgccgacgaccctg
ctcgctcagcagcacttcgacaacttccgcgatcgcttcgccaactggccggtgcgcatc
gaaatgctgtctcgcttccgcagcgccaaagaacaggcgcagattctggaacaggcggcc
gagggcaaaatcgatattctgatcggcacccacaagctgctgcagagcgaagtgaagctg
cgcgatcttggtctgctgatcgtcgatgaggagcaccgcttcggcgtgcggcataaggag
cgcatcaaggccatgcgcgccgatgtcgatattctgacgctcaccgcgacgccgatcccg
cgtaccctgaatatggccatgagcggcatgcgcgatctgtcgattatcgccacccctccg
gcgcgccgtctggcggtgaaaaccttcgttcgcgagtacgatgcgctggtggtacgcgag
gccatgctgcgtgaaatactgcgcggcggccaggtctactatctctacaatgacgtggaa
aacatccagaaagccgccgaccgcctggccgagctggtgcccgaggcccgcatcgccatc
ggtcacgggcagatgcgcgaacgcgagcttgagcgggtgatgaacgatttccaccaccag
cgctttaacgtgctggtctgcaccaccattattgaaaccgggatcgatatcccgaccgcc
aatacgatcatcatcgagcgcgccgatcatttcggccttgctcagctgcaccagctgcgc
gggcgcgtcgggcgttcacaccatcaggcctacgcctggctgctgactccgcatcctaag
gcgatgtccaccgatgcgcaaaagcgtctggaagcgatcgcctcgctggaggacctcggc
gccgggttcgccctggccacccacgatctggaaattcgcggcgccggcgagctgctgggc
gaagaccagagcgggcagatgaccaccatcggcttctcgctgtatatggagctgctggag
aacgccgttgatgccctgaaggccggacgcgagccgtcgctggaagacctgaccagccag
caaacggaggtcgaactgcggatgccgtccctgctgccggacgactttatcccggatgta
aatacccgactctcgttctacaagcgcatcgccagcgccaaaagcgagcacgagctggag
gagatcaaggttgagcttattgaccgcttcggcctgctgccggacgcggccagaaatctg
ctggatatcgcccgtctgcgccagcaggcgcagaagcttggcattcgcaagctggagggg
aacgaaaaaggcggcatgattgagtttaacgaaaagaaccacgtcaacccggtgtggctg
attggcctgctgcagaaacagccgcagcacttccgcctcgacgggccgacgcggctgaag
tttatgcaggatctcgccgagcggaaaacgcgcatggagtgggttcgccagtttatgcgc
cagctggaagagaacgccgtcgcctga
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