Raoultella ornithinolytica S12: TE10_24810
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Entry
TE10_24810 CDS
T03629
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TE10_24810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ron03019
]
TE10_24810
03009 Ribosome biogenesis [BR:
ron03009
]
TE10_24810
Enzymes [BR:
ron01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TE10_24810
Messenger RNA biogenesis [BR:
ron03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TE10_24810
Ribosome biogenesis [BR:
ron03009
]
Prokaryotic type
rRNA helicases
TE10_24810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AJF75072
LinkDB
All DBs
Position
complement(5406696..5408717)
Genome browser
AA seq
673 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLTNIKPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRAKREFRDRDDRFERRNDRNDRNDRGPRGDRPER
TERSGEDRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGT
HSTIELPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPRPERSGGERRGGGERREGGRAF
GGGERREGGRSFGGERREGGRGDGRRFSGERREGQAPRREGHAPRRDDSAPRREDSAPRR
DDSSSRRRFGGDA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgaatgcattccgcatctg
ctgggcggccgcgatgttctgggtatggcccagaccggtagcggtaaaactgcagcgttc
tctttaccgctgctgaacaatcttgatcctgagctcaaagcaccgcaaatcctggtgctg
gcgccgacccgcgaactggcggtacaggttgctgaagcgatgacggacttctctaaacat
atgcgcggcgtaaacgtggtagccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccacaaattgttgtcggtaccccgggtcgtctgcttgaccacctg
aagcgcggtactctggatctctctaagctgagcggtctggtgctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaactatcatggctcagatcccggaaggt
catcagaccgctctgttctctgccactatgccggaagcgatccgtcgtattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgttactactcgcccggacatc
agccagagctactggactgcttacggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggccgaagcgctggagcgtagcggctataacagcgccgcgctgaacggtgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggtcgtctggacatcctgatt
gcgaccgacgttgcggcccgtggccttgacgttgaacgtatcagcctggttgttaactac
gacatcccgatggactccgaatcttacgttcaccgtatcggccgtaccggtcgtgcaggt
cgtgcaggccgtgcgctgctgttcgttgagaaccgcgaacgccgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccggaagtagagctgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgctaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctgacgaacatcaagccgtccgctgaaggcgaagagctggat
atcgaaactctggccgcagcactgctgaaaatggctcagggcgaacgtcctctgatcctg
ccgccggatgcgccgatgcgtgctaaacgcgaattccgcgatcgcgacgatcgtttcgaa
cgtcgtaatgaccgtaacgatcgcaatgaccgtggcccgcgtggcgaccgtcctgagcgt
actgagcgtagcggtgaagatcgtcctaaacgcgagcgtcgtgacgttggcgatatggaa
ctgtatcgcattgaagtgggccgcgacgatggtgttgaagttcgtcacattgttggcgct
atcgctaacgaaggcgacatcagcagccgttacatcggtaacatcaagctgttcggtacc
cactcaacgatcgagctgccgaaaggcatgccgggcgaagtgctgcagcactttactcgt
acccgtatcctgaacaagccgatgaacatgcagctgatgggcgatgcccagccgcgccct
gagcgtagcggtggcgagcgtcgtggcggcggtgaacgtcgtgaaggcggccgtgctttc
ggtggtggcgaacgtcgtgaaggcggtcgtagtttcggcggtgaacgtcgcgaaggcggt
cgtggtgatggtcgtcgtttcagcggcgaacgtcgtgaaggccaggcaccgcgtcgtgaa
ggtcatgctccgcgccgtgatgattcagcgccgcgtcgcgaagattcagccccgcgtcgg
gatgactcttcaagccgtcgtcgtttcggtggcgatgcgtaa
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integrated database retrieval system
