Roseimicrobium sp. ORNL1: G5S37_00580
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Entry
G5S37_00580 CDS
T06460
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
roo
Roseimicrobium sp. ORNL1
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roo03019
]
G5S37_00580 (hrpA)
Enzymes [BR:
roo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5S37_00580 (hrpA)
Messenger RNA biogenesis [BR:
roo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5S37_00580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
ABC_tran
PhoH
T2SSE
AAA_25
AAA_30
SRP54
FtsK_SpoIIIE
TsaE
NACHT
Motif
Other DBs
NCBI-ProteinID:
QIF00075
UniProt:
A0A6G6JXP4
LinkDB
All DBs
Position
complement(160780..164730)
Genome browser
AA seq
1316 aa
AA seq
DB search
MHPAGLPPRPSVLKITCSSRDLRHIPGPQSPTLPSPVSPTLNIRYPADLPITARREEIVA
AIRQHQVVILAGETGSGKTTQLPKMCLEALPDARGKIGCTQPRRVAAMSVSKRVAEELNV
PWGGLVGCKMRFADDTSRDTRVKFMTDGILLAEIQSDPMLRGYSVLILDEAHERSLNIDF
LLGYLVGLLKKRPDLKLLVTSATIDTEAFSKAFGNAPIIEVSGRLYPVEIRYRPFEEEDE
DMGVIDAAVAAVEDSLIESNEGDILVFMPTERDIRDARDLIEGRIGNGYEVLPLFGRMAS
AEQQRIFSPGRKRRVVIATNVAETSITIPRIRYVIDSGLARVSRYNSRTRTKRLPVEAVS
QSSANQRAGRAGRVQDGICIRLFSQEDYLKRERFTMPEIQRANLAEVILRMKAFKLGDIE
SFPFINPPSHAAVRGGYELLRELGSLSDTHDLTSLGHELAKLPLDPTLGRMLLQAREERV
LPEMLVIAAGLSIPDPRERPEEKKEQANAAHKAFAAPDSDFMTLWKIWSASPEPGQRSRN
ALGKFCKSSFLSFTRMTEWRDIWKQLTETFDRDLREAAAAGELKTTLTVEDRVHRCILAG
QLSHIALKEGKNIYKAGGNREVMLFPGSNLYERREKNAPHAKPGQQEKSKQPAWIVAGEI
VHTSQLFARTVAKIQPDWIAELGAHLVQYKYSEPQWNAKAGRVLVTQRTLLHGLEVKRQS
IDFGKVDAVAATDLFIRGALIDNRDTPITLRFYKHNHTLREKIETMLTRVRDNRVYAIDE
RLFAFYQRHLHGANISSIHDLNQFVNERAAEQPSFLCVTEEELTRGEDFACDPKLFPDQV
SVGNSVLPVTYQYRPGEEDDGVTVRVPMQIAAHLTSAQVQWMVPGLREEIATVLMRALPR
ALRRSFMPIEAKAREVAHEFDPGTGDFFATFANHLTRRYGIDVKPEDWPPNSLPGHLHPR
VEVLDQKKNTLMVGRDLSEIQKTVKKQDVKSDAWEKTVARVERHALKAWSFGDLPESLVV
EHVAGVEVRGWFGLAAREHEVDVRLYRTREEAARVSVGGVRKLAEIALGKDLVWLMKELR
GIGLGIGGSNSSSNSGRGLQGAAALAAVSLALEARDSGRLKSPLLGNSASPSSSSLVKTS
AEQLQQSAYEHILAHALRLDPVFPLTEKRFLALCDQVRRELPALTHRVKSLVTQVQEQKG
KLLTLSKRYPGLEKDVQRLVPPDVLAVTPHAQLTHLARYLKAIQVRNDRWIANPAKDDAK
ADLIADFAFDAWPTHVPKSQHETYRWMLEEFRVQVFAPELGTAQPVSEKRLEAMLG
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctgctggattgccaccacgccccagcgttctcaaaatcacctgctcttcccgc
gacttgaggcatattcccggccctcaatctcccacgctcccatcccccgtgtcccccacc
ctcaacatccgctatcccgcagacctgcccatcacggcgcggcgggaggagattgtggcg
gcgatacggcagcaccaggtcgtgattctcgcgggggagacgggctcggggaagacgacg
cagcttccgaagatgtgcctggaggcgctgccggacgctcggggaaaaattggctgcacc
cagccgcgacgcgtggcggcgatgagtgtctccaagcgcgtggcggaggaactcaatgtg
ccctggggcggtctcgtggggtgcaagatgcgcttcgcggatgacacgagccgcgacacg
cgggtgaagttcatgacggacggcatcctgctcgcggaaatccagagcgacccgatgctg
cgcggctactcggtgctcatcctggatgaggcgcatgagcgctcgctgaatatcgacttc
ctgctgggctacctcgtgggcctgctgaagaagcgcccggacctgaagctgctggtcacg
tctgcgaccatcgatacggaggcgttctccaaggcctttggcaatgcgcccatcatcgag
gtgtccggccgattgtatcccgtcgagattcgctaccgccccttcgaggaagaggatgaa
gacatgggcgtcatcgatgcggcggtggcggcggtggaggactcactcatcgagagcaat
gagggcgacatcctcgtcttcatgccgacggagcgggacattcgtgatgcacgtgatctc
attgagggacgcatcggcaatggctatgaggtgctgccgctctttggtcgcatggcctcc
gcagagcagcaacgcatcttctccccgggaaggaaacgccgcgtggtcatcgcgacgaac
gtggcggagacatccatcaccatcccgcgcatccgttatgtgatcgacagcggcctcgcg
cgtgtgagccggtacaactcccgcacgcgcacgaagcgcctgccggtggaggccgtgtcg
cagagcagcgcgaaccagcgtgccggtcgcgcgggtcgtgtgcaggatggcatatgcatc
cgcctcttttcacaggaggactacctgaagcgcgaacgcttcaccatgccggaaatccag
cgggcgaatctcgcggaggtcatcctgcgcatgaaggccttcaagctgggtgatatcgag
agcttcccgttcatcaatccgccctcgcatgcggcggtgcgcggtggttatgaattgctg
cgcgagctcggctcgctgagtgacacgcatgatctcacctcgctggggcatgaacttgcg
aagctgccactggaccccacgctgggccgtatgctactgcaggcacgcgaggagcgggtg
ctgcctgagatgctcgtcatcgccgcggggctgagcattcccgacccgcgtgaacgaccg
gaggagaagaaggagcaggccaatgccgcgcacaaggccttcgccgcgccggactcggac
ttcatgacgctgtggaaaatctggagcgcgtctccagaacccggccagcgctcgcgcaat
gcgctgggcaagttttgcaaatcgagcttcctctccttcacgcgcatgacggagtggcgc
gatatctggaagcagctcacagagaccttcgaccgcgacctgcgtgaggccgctgcggca
ggcgagctgaagaccacactcaccgtggaggaccgcgtgcatcgctgcatcctcgcggga
cagctcagccacatcgcgctgaaggaagggaagaatatctacaaggcgggcggcaatcgc
gaggtgatgctcttcccgggctcgaacctgtatgagcgtcgcgagaagaatgcgccgcat
gccaagccgggccagcaggagaagagcaagcagcccgcgtggattgtggccggtgagata
gtgcatacctcgcagctcttcgcccgcaccgtggcgaagatacagcccgactggattgcc
gagctgggcgcgcacctggtgcagtacaaatacagcgagccgcagtggaatgcgaaggcg
ggacgtgtgctcgtcacgcagcgcacgctgctgcacgggctggaggtgaagcggcagagc
atcgacttcggcaaagtggatgccgtggcggcgacggatttgtttatccgtggcgcgctt
atcgataaccgcgatacacccatcacgctgcgcttctacaagcacaaccacactttgcgt
gagaagatagagaccatgctcacgcgcgtgcgggacaatcgcgtgtatgccatcgatgag
cggctcttcgccttctaccagcggcacctgcacggcgcgaacatttcctccatccatgac
ctgaaccagttcgtgaatgagcgcgcggcggagcagccttccttcctctgcgtgacggag
gaggagctgacacgtggcgaggacttcgcgtgtgacccgaagcttttcccggatcaggtc
tccgtggggaacagcgtgctgcccgtgacctatcaataccgtcccggtgaggaggacgat
ggcgtgactgtgcgtgtgccgatgcaaatcgccgcgcatctcaccagtgcccaggtgcag
tggatggtgcccggcctgcgcgaggagattgccaccgtgctcatgcgcgcgctgcctcgt
gccttgcgtcgcagcttcatgcccatcgaggccaaggcgcgtgaggtggcgcacgagttc
gacccgggcacgggcgatttcttcgccaccttcgctaatcatctcacgcggcgctatggc
atcgacgtgaagccggaggactggccgccgaacagcctgccgggccacctgcatccgcgc
gtggaggtgctggaccagaagaagaacaccctcatggtgggccgcgacctcagcgagatc
cagaagacggtgaagaagcaggacgtgaaatccgatgcgtgggagaagaccgtggcccgc
gtggagcggcacgcgctgaaggcctggtcctttggcgacctgcccgagagcctcgtggtg
gagcacgtcgccggcgtggaggtgcgcggttggttcggcctcgccgcgcgcgagcatgag
gtggatgtgcgcctttaccgcacgcgtgaagaagccgcacgtgtctccgtgggtggcgtg
cgcaagctggcggagatagccctgggcaaggaccttgtgtggctcatgaaggagctgcgc
ggcatcggtctcggcattggcggtagtaacagcagcagcaacagcgggcgcggactccaa
ggagcggctgctttagctgccgtttcgctcgcgctcgaagcgcgggatagtgggcgacta
aagtcgcccctccttgggaatagcgcgagcccaagctccagcagcctggtgaagacctcc
gctgagcaactccaacagagcgcctatgagcacatcctcgcgcatgcgctgcggctcgac
cccgtgttcccactcacggagaaacgtttcctcgcgctgtgcgaccaggtgcgccgcgag
ctgcccgcgctcacgcatcgtgtgaagtccctcgtcacccaggtgcaggagcagaagggc
aagctgctcacgctctccaagcgctatcccggcctggagaaagacgtgcagcgcctcgtg
ccccccgatgtgctcgccgtgaccccgcacgcgcaactcacccacctcgcccgctatctc
aaggccatccaggtccgcaacgaccgctggatcgccaaccccgccaaggacgacgccaaa
gccgacctcatcgccgacttcgccttcgacgcctggcccacccacgtgcccaagtcccaa
cacgaaacctaccgctggatgctggaagaattccgcgtgcaggtgtttgcgcctgaactc
ggcaccgcgcagccggtgagtgagaagcggctggaggcgatgctggggtag
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