Roseimicrobium sp. ORNL1: G5S37_02530
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Entry
G5S37_02530 CDS
T06460
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S37_02530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roo03021
]
G5S37_02530 (rpoC)
03400 DNA repair and recombination proteins [BR:
roo03400
]
G5S37_02530 (rpoC)
Enzymes [BR:
roo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S37_02530 (rpoC)
Transcription machinery [BR:
roo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S37_02530 (rpoC)
DNA repair and recombination proteins [BR:
roo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S37_02530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIF00445
LinkDB
All DBs
Position
627561..631700
Genome browser
AA seq
1379 aa
AA seq
DB search
MSFDNHLKEIFGESHKTGGFDMVSISVASPDRIRSWSHGEVKNPETINYRTFKPEKGGLF
CERIFGPTRDWECACGKYKRIKHKGVICDRCGVEVTLSRVRRERMGHIELAVPVTHIWFY
KCMPSRIGLMLDMTARSLERVIYYEDYIVVSPGNTPLQRGQLLTEMELREAEDQYGAESF
KVGMGAEAIRDILAQANLAEMVKELELAMTKTRSKQLRKKIAKRLKLCQGFATSHTRPEY
MVMEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKNLLSLKTPDVIIRNEK
RMLQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIV
IGPDLGLHQCGLPKKMALVLFEPFIIRRLKELGLVHTVRSAKKMIERRTPEVWDILDEVT
RGHPVLLNRAPTLHRLSIQAFEPKLIEGEAIRVHPLVCTAYNADFDGDQMAVHVPLSIEA
QMEARLLMLAPNNLFSPASGKPVMTPSQDIPLGCFALTYLREIPQHDDGKKKKDAPRLPL
FNDPSEVEFALSENAVEVNQKVLYRNPDFQSKGRTYGDPTKAVIETTAGRIRFNEIWPDE
LGYYNNTVGKKQLSDIIWRCFQKTGHQETVAALDRLKNLGFREAMKSGCSIGITDMVIPK
AKYDKVDAARAEVTKVEKQYKNGIITAGEKYQKVIDIWTGAGDQVTDEVFRTLEFNDGKK
YHNPLYIMVTSGARGNKTQIKQLAGMRGLMAKPDGSIIERPITSNFREGLTVLEYFISTH
GARKGLSDTALKTADSGYMTRKLVDVAQDVIVTEDDCGTVNGIHLSSIYQGDEEVVDLKT
RIYGRVSCETVHDPVDRKNTIVEHGQLITEDVANKLVKIGVEKLKIRSVLTCESKRGCCS
KCYGLSLATSRMVKVGEAVGIVAAQSIGEPGTQLTMRTFHVGGVASGAFKQPIIVAKNNG
SLRFNDIRVVQTPEGWIALNKNGTISILDDDGRELESHKIVLGAVIAKEEHGKVKKGETI
VTWDPYNVPIITEKAGKIEFRDMMSGVTFTKAVNQATGNEETVVIEHKEDLHPQIVVVDP
KTKEILASYTIPAGAHLSVKNNEKIEAGTILAKTPRKASKTKDITGGLPRVAELFEARKP
KDACEIAKIDGVIEIAGLVRGKRKVLITDPKSGQQEEHLIPRSKHIFVQNGDVVTKGDQL
TEGAVVPHEILEILGPQALREHLVNEVQEVYRAQGVEINDKHVEIIIRQMLRKVKITEPG
DTTFLWGDQVDRLQFERENQRVSDEGGKPASGEPVLLGITKASLETDSFISAASFQDTTR
VLTEAATLAKNDLLRGFKENVIMGHLIPAGTGFQSNRDFHINETVKVAYSTAETQEEVA
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgataaccatctcaaggaaatcttcggggagtcgcacaagaccggcggcttc
gacatggtctccatctccgttgcttcaccggatcgcatccgctcctggagccacggcgaa
gtaaagaacccggagacgatcaactaccgtaccttcaagcctgaaaagggcggtcttttc
tgcgagcgcatctttggtcccacgcgtgactgggagtgcgcctgcggcaagtacaagcgc
atcaagcacaagggcgtcatctgcgaccgttgcggcgtggaagtgaccctgagccgcgtg
cgtcgtgagcgcatgggccacatcgagctggccgtgcccgtcacgcacatctggttctac
aagtgcatgccttcccgcatcggcctcatgctcgacatgacggcccgttcgctggagcgc
gtgatctactacgaagattacatcgtcgtctcccctggcaacaccccgctgcagcgcggc
cagctcctcacggaaatggaactgcgcgaagctgaggaccagtacggtgccgaaagcttc
aaggtcggcatgggtgccgaggccatccgcgacattctcgcccaggcgaacctggcggaa
atggtcaaggaactcgagctggccatgacgaagacccgctccaagcagcttcgcaagaag
atcgccaagcgtctcaagctttgccagggctttgccacttcgcacacccgtccggagtac
atggtcatggaagtgctgccggtcatcccgccggacctccgtccgctggtgcccctcgaa
ggcggccgcttcgcgacctccgacttgaacgacctctaccgtcgtgtcatcaaccgtaac
aatcgtctcaagaacctgctctcgctcaagacgccggatgtcatcatccgcaacgaaaag
cgcatgctgcaggaagctgtcgatgcgttgttcgacaacggccgccacggccgtgcggtg
accggtgcgggcaaccgtccgctgaagtccctgtccgacatgctcaagggcaagtccggt
cgtttccgccagaacctgctgggcaagcgagtggactactccggtcgttccgtcatcgtg
atcggtccggacctcggtctgcatcagtgcggtcttcccaagaagatggcgctcgtgttg
ttcgagcccttcatcatccgccgtctcaaggagcttggcctcgtgcataccgtgcgctcc
gccaagaagatgattgagcgccgcaccccggaagtgtgggacatcctcgatgaggtgacc
cgcggacacccggtgctgctcaaccgtgcgccgaccctgcaccgcctctcgatccaggct
ttcgaaccgaagctcatcgaaggtgaagccatccgcgtgcatccgctcgtgtgtaccgct
tacaacgcggacttcgacggtgaccagatggctgtgcacgtgccgctgtcgatcgaagcg
cagatggaggcccgcctcctcatgctcgctccgaacaacctgttctcccctgcgagcggc
aagcccgtgatgactccttcccaggacatcccgctgggctgcttcgccctcacctacctg
cgcgaaatcccgcagcatgatgacggcaagaagaagaaggatgctccgcgcctcccgctc
ttcaacgacccgtccgaagtggaattcgccctcagcgaaaacgctgtggaagtgaaccag
aaggtgctctaccgcaacccggacttccagagcaagggccgcacctatggcgacccgacc
aaggcggtcatcgagaccaccgctggccgcattcgtttcaacgaaatctggcccgacgag
ctcggttactacaacaacactgtgggcaagaagcagctctcggacatcatctggcgttgt
ttccagaagaccggtcaccaggaaacggtggcggctctggaccgtctgaagaacctcggc
ttccgcgaagccatgaagtccggctgctccatcggcatcaccgacatggtgattccgaag
gcgaagtacgacaaggtggacgcggctcgcgccgaagtcaccaaggtcgagaagcagtac
aagaacggtatcatcaccgccggtgaaaagtaccagaaggtcatcgacatctggaccgga
gctggcgatcaggtcaccgacgaggtgttccgcacgctcgagttcaacgacggcaagaag
taccacaacccgctgtacatcatggtcacctccggtgcccgtggtaacaagacgcagatc
aagcagctcgccggtatgcgcggccttatggccaagcccgacggctccatcattgagcgt
cccatcacctcgaacttccgtgagggcctcacggtgctggagtacttcatctccacgcac
ggtgctcgtaagggtctttccgacaccgctctgaagacggcggactccggctacatgacc
cgcaagctggtcgacgtggcccaggacgtcatcgtgacggaagatgattgcggcacggtc
aacggcatccacctctcctccatctatcagggtgacgaagaggttgtggatctcaagacc
cgtatctatggacgtgtctcctgcgagaccgtgcatgatccggtggatcgcaagaacacc
atcgtggagcacggccagctcatcaccgaagacgtggcgaacaagctcgtgaagatcggt
gtggagaagctgaagatccgctccgtgctcacctgcgaaagcaagcgcggttgctgctcc
aagtgctacggcctcagcctcgccaccagccgtatggtgaaggtgggtgaagcggtcggc
attgtggccgcccagtccatcggtgaacctggaacgcagctgaccatgcgtacgttccac
gtcggtggtgtggcgagcggtgcgttcaagcagcccatcatcgtcgcgaagaacaacggt
tccctccgcttcaacgacatccgcgtcgtgcagaccccggaaggctggatcgctctcaac
aagaacggtaccatcagcatccttgatgacgatggccgcgagctcgagtcccacaagatc
gtgcttggcgccgtgattgccaaggaagagcatggcaaggtgaagaagggcgagaccatc
gtcacctgggatccgtacaacgtgccgatcatcacggagaaggcgggtaagatcgaattc
cgcgacatgatgagcggtgtgaccttcaccaaggccgtcaaccaggcgaccggcaatgaa
gagaccgtcgtcatcgagcacaaggaagacctgcacccgcagatcgtcgtggtggatccg
aagacgaaggaaatcctcgccagctacaccatccctgcaggcgctcacctttcggtgaag
aacaacgagaagatcgaagccggtaccattctggccaagacgcctcgcaaggcctccaag
acgaaggacatcaccggcggtctgccgcgtgtggccgaactcttcgaagcccgcaagccg
aaggacgcgtgcgaaatcgcgaagatcgacggtgtcatcgaaatcgccggcctcgtacgt
ggcaagcgcaaggtgctcatcaccgatccgaagtccggccagcaggaggaacacctcatc
ccgcgcagcaagcacatcttcgtgcagaacggcgatgtggtcaccaagggcgaccagctc
acggaaggcgcggtcgtgccgcatgaaatcctcgagatcctcggacctcaggctctgcgc
gagcacctggtgaacgaagtgcaggaagtgtaccgcgcccagggcgtggaaatcaacgac
aagcacgtcgagatcatcatccgccagatgctgcgcaaggtgaagatcaccgaaccgggc
gacaccacgttcctctggggcgatcaggtggaccgcctccagttcgagcgcgagaaccag
cgcgtctccgacgagggcggcaagcccgcgagcggcgagccggtgctcctcggcatcacc
aaggccagcctcgaaacggacagcttcatcagcgccgcgagcttccaggacaccacccgt
gttcttaccgaagccgccaccctggcgaagaacgacctgctccgcggcttcaaggaaaac
gtcatcatgggacacctcatccccgctggtaccggtttccaaagcaaccgcgacttccac
atcaacgagaccgtcaaggtggcctactccaccgcggagactcaggaagaagtggcgtaa
DBGET
integrated database retrieval system
