Roseimicrobium sp. ORNL1: G5S37_17320
Help
Entry
G5S37_17320 CDS
T06460
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S37_17320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roo03019
]
G5S37_17320
Enzymes [BR:
roo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5S37_17320
Messenger RNA biogenesis [BR:
roo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5S37_17320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Cas3-like_C_2
AtuA
API5
Motif
Other DBs
NCBI-ProteinID:
QIF03207
UniProt:
A0A6G6K6X6
LinkDB
All DBs
Position
4262904..4264256
Genome browser
AA seq
450 aa
AA seq
DB search
MPFRALGLDARILKAISEAGYTEPTPIQSAAIPEVMADHDVIGIAQTGTGKTAAFTLPLL
TKLAAITGQGPLRGIKALILAPTRELVVQIEENVKAYAKHLPLRVATVFGGVGERPQIEA
LRRGADIVIATPGRLLDLMNQRHGNFRALEHLVLDEADRMLDMGFLPSIRRIIKELPPKR
QTLMFSATLSKEIETLTHEFQHRPKQVQIGRRSNPAETVTQWVYEVPKHLKPALLLHLMK
DPGFNMVLVFCKMKHAADRLARFFESRGIKTAALHSNRSQNQRLRALADFKSGAVRVLVA
TDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAQAIGDALSFVTSEDQSALRSLE
RFIGRGLPRKKAEDFDYSAQPSAAAQPEAREREQKPRVLHNYSRRQGSSSGGGGGRGERR
EGGNRGGGRSRDGGGRSSGSGSGQRSRGPR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgccattccgcgccctgggcctcgacgcccgcattctcaaagccatcagcgaagctggc
tacaccgagcccacgcccatccagtccgcagccatcccggaagtgatggcagaccatgac
gtcattggcatcgcccagacgggcactggcaagaccgctgccttcaccctgccgctgctc
accaagctggctgccatcaccggccagggtcccctgcggggcatcaaggcgctcatcctc
gcccccacccgcgagctcgtcgtgcagattgaggagaatgtgaaggcctatgccaagcat
ctgccgctgcgggtcgccacggtattcggaggcgtgggcgagcgcccccagatcgaagcg
ttgcgcagaggcgcagacatcgtgattgccactcccggtcgtcttctcgatctgatgaac
cagcggcacgggaacttccgtgcccttgagcatctcgtgctggatgaggctgaccgcatg
ctggacatgggcttcctgccctccatccgccgcatcatcaaggaactgcctccaaagagg
cagacgctgatgttctccgccacgctttcgaaggagatcgaaacgctcacccatgagttc
cagcatcgcccgaagcaggtgcaaatcggtcggcgctccaaccccgccgagacggtcacc
cagtgggtctacgaagtgcccaaacacttgaagcccgcgctgctgctgcacctgatgaag
gatcccgggttcaacatggtgctggtattttgcaagatgaagcacgcagcggaccgcctc
gcacgcttctttgaaagccggggcatcaagacggccgcgctccactcaaaccgttcgcag
aaccagcgcctgcgcgcgctggctgatttcaagagcggtgctgtgcgtgtactggtggcc
actgatatcgcagcccgcggcatcgacgtggatggcatttcgcacgtggtgaactacgac
ttccccatgcatgccgaggactacgtccaccgcattggccgtacgggacgcgcccaggcg
attggcgatgcactgagctttgtcacgtctgaagaccagtccgcactccgctcgctggag
cgcttcattgggcggggtctgccgcgcaagaaggcagaggattttgactacagcgcgcag
ccctccgctgccgcgcagccggaagcccgcgagagggagcagaaacccagggtgcttcac
aactacagccgacgccagggatcgtcatccggcggtggcggcggcaggggcgagcgccgt
gagggaggcaatcgaggcggagggcggtctcgcgatggaggaggccggagctctggctct
ggctcgggacagcgcagccgcggcccacggtag
DBGET
integrated database retrieval system
