Roseimicrobium sp. ORNL1: G5S37_19820
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Entry
G5S37_19820 CDS
T06460
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo02020
Two-component system
roo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
G5S37_19820 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G5S37_19820 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roo03021
]
G5S37_19820 (rpoN)
Transcription machinery [BR:
roo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G5S37_19820 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Tnp_ISL3
LacI
HTH_Crp_2
Slx4
Motif
Other DBs
NCBI-ProteinID:
QIF03672
LinkDB
All DBs
Position
4883852..4885252
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AA seq
466 aa
AA seq
DB search
MSSQGLFQTQSLKQVIGPQMQQSLQILQAPALELQQIVQQELAVNPVLEVENSEVSLEQT
APEDPDADISSLSRLDEEWREYYAQQRSSVGPRTSEDDEKHRFMMDSITAETTLQEHLLS
QLNLADSGDEKLREMAEFIIGNIDDDGLLHTSLDELSLRHGLPMDDLAKAKALVQSFEPA
GVGAENLRECLMLQLERQGRKSSLAHRIVDHHLEDLAHKRYTLLAKKLAAPPDQISRAVE
VIASLDPRPAQGFAQMRNHYVTPDIRVERSNGSYTPIMNERDLPHLRISNAYKDLLAQPE
TGNEARSYIREKIRGAKFLIRSIAQRQQTIQRIATEIIAHQHDFFEKGPSMLKPLNMATV
AEAVGVHETTVSRAIAGKFIATPHGVFELKYFFTSGVRTEGGDDVSNTAVKNAIGEIIKT
EPPHKPLSDEQLVKHLNDRGIKVARRTVAKYREAMGVLPSHLRKSA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccagccagggcctcttccaaacccagtcgctaaagcaggtcattggacctcagatg
cagcagagtctgcagatcctgcaagcccccgcgcttgagctccagcagatcgtacaacag
gaactggcggtgaatcccgtcctggaggtcgagaactccgaggtctctctggagcagacc
gccccggaggatccggatgcggacatctcctccctctcccgcctggatgaggagtggcgt
gaatactatgcacagcagcgctcctcggtgggcccgcgcacatcagaagatgatgagaaa
catcgcttcatgatggattccatcaccgcagagaccacgctccaggaacacctcctcagc
cagctcaacctggccgactccggtgacgagaagctgcgcgaaatggccgagttcatcatt
ggaaacattgatgacgatggcctcctgcacaccagtctggatgagctgagcctccgtcac
ggactgccgatggatgatctcgcaaaggcgaaggcgctcgtgcagagcttcgagcctgcc
ggcgtgggcgcggagaaccttcgcgaatgcctcatgttgcaactcgagcgccagggcagg
aagtccagcctcgctcaccgcattgtggatcatcacctggaggatctggcgcacaaacgc
tacacgctgctggccaagaaactcgccgctccgccggatcagatctcacgcgctgtggag
gtcatcgcctcgctcgacccacgccccgcgcagggatttgcccagatgcgcaatcactac
gtcacgccggacattcgcgtggagcggagcaatggctcctacacccccatcatgaatgag
cgcgacctgccgcacctgcgtatcagcaatgcgtacaaggatcttctcgcccagccggag
accggcaacgaagcgcgcagctacatccgtgaaaagattcgcggcgcgaagttcctcatc
cgcagcatcgcgcagcggcagcagaccatccagcgcatcgccacggaaatcatcgcacac
cagcatgacttctttgagaagggaccaagcatgctgaagccgctcaacatggccaccgtg
gccgaggccgtgggtgtgcatgaaacgaccgtgagccgcgccatcgccgggaagttcatc
gccactccacatggtgtgtttgagttgaagtacttcttcaccagcggcgtccgcaccgag
ggcggagatgacgtgagcaacaccgccgtgaagaacgccatcggggaaatcatcaagacc
gagccccctcacaaaccgctgtcagacgaacaactcgtaaagcacctcaacgaccgcggc
atcaaagtcgcccgccgcaccgtggcgaagtatcgcgaagccatgggcgtgctcccgagt
catttgaggaagtcggcgtag
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