Roseimicrobium sp. ORNL1: G5S37_24235
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Entry
G5S37_24235 CDS
T06460
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S37_24235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roo03021
]
G5S37_24235
03019 Messenger RNA biogenesis [BR:
roo03019
]
G5S37_24235
Transcription machinery [BR:
roo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
G5S37_24235
Messenger RNA biogenesis [BR:
roo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G5S37_24235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
ATPase_2
NACHT
AAA_22
AAA
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QIF04504
LinkDB
All DBs
Position
complement(6035143..6036615)
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AA seq
490 aa
AA seq
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MVSEDITDSAEQVPATPAAPTEAAAETVVTAPNAEVTAPSPEQPAPNGAKPAGPHGQAAA
EKGALKAEAPFPEEASVNEMQAMSIGALQTLAATVGWRVNGSRTKHQLIAELTAWLLQHG
TKVHVEGFLEMQQESYGLLRYPKHSFMPLPEDIFVPIFVIRKFGFRPGQLLKGSLKVPTS
KEKYLAIERITEVEGRSIDEWQTPADFDKLTATFPSERIILEQAKNPSVSSRVVDLVAPL
GKGQRALIVASPRSGKTMLLKDIARSIKANHSEISLIILLLDERPEEVTDFEESVDADIF
SSTFDEAPKRHSQVAELVLERAKRLVEMGRDVVILLDSITRLARGYNAMLGGKGRTMSGG
LDAKALMKPKKFFGAARKVDEGGSLTIVATALTETESRMDEVIFEEFKGTGNMEVSLDRE
ISERRIFPSIHVLKSGTRRDDLLYHPDEFKRIAIIRKQLASVPAFEALEHLIKNIERSKS
NAELLLSGLR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggtaagtgaagacatcacggattccgctgagcaggtgcccgcaacccctgcggcccct
accgaagcagcggctgaaaccgtcgttacggcccccaatgccgaagtgaccgccccctct
ccagaacaacccgcccctaatggtgccaagccggctggtccccatggccaggcggccgct
gaaaagggagcattgaaggctgaggcacctttcccagaagaggcatccgtgaatgaaatg
caggccatgagcatcggggccttgcagactcttgcagccacggtcggatggcgcgtgaat
ggaagccggaccaagcaccagttgattgccgagctcaccgcctggttgcttcaacatgga
accaaggtgcatgtggaaggcttcctggaaatgcagcaggagagctatggtctgctgcgc
tatcccaagcacagtttcatgcctctgccggaggacatttttgtgccgatcttcgtgatc
aggaagttcggcttccgtccgggtcagctcctcaagggcagcttgaaggtgcccaccagc
aaggagaaatacctggcgatcgagcgcatcaccgaggttgaggggcgcagcattgacgag
tggcagacaccggcggatttcgataaattgacggccacgttcccctcggagcgcatcatt
ctggagcaggcgaagaatcccagcgtgagcagccgcgtggtggacctggtagccccgctt
gggaaaggccagcgtgctttgattgtggcttcgccccgctcgggcaagacgatgctcctc
aaggacattgcgcgctccatcaaggcgaaccacagcgaaatttccctcatcatcctgctt
ctggacgagcgtcctgaggaagtgacggactttgaagagagcgtcgatgccgacatcttc
agctccacctttgacgaggcgcccaagcggcattctcaggtcgcggagctggtgctggag
cgtgcgaagcggctcgtggagatgggccgtgatgtggtgatcctgctggacagcatcacc
cgcctggctcgtggctacaacgccatgctaggcggcaagggccgtacgatgtcgggcggt
ctcgacgccaaggcgctcatgaagccgaagaaatttttcggtgcagcgcgcaaggtggac
gagggcggttcactgacgatcgtggccacagctctgacggaaaccgagagccgcatggac
gaggtgattttcgaggaattcaaaggcaccggcaacatggaggtgagcctcgatcgcgag
atctccgagcgccgcattttcccctccatccacgtgctgaagtcaggtacgcgccgcgac
gacctgctgtaccacccggatgagttcaagcgcatcgctatcatccgcaagcagcttgcg
agcgtgccggcatttgaggcgctggaacatctcatcaaaaacatcgagcgcagcaagagc
aacgcggagctgctgctttcgggactgcgctga
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