Roseimicrobium sp. ORNL1: G5S37_30965
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Entry
G5S37_30965 CDS
T06460
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S37_30965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roo03019
]
G5S37_30965
03400 DNA repair and recombination proteins [BR:
roo03400
]
G5S37_30965
Enzymes [BR:
roo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5S37_30965
Messenger RNA biogenesis [BR:
roo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5S37_30965
DNA repair and recombination proteins [BR:
roo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G5S37_30965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
LexA_DNA_bind
DUF4364
Motif
Other DBs
NCBI-ProteinID:
QIF06227
UniProt:
A0A6G6KFP2
LinkDB
All DBs
Position
complement(7650977..7653154)
Genome browser
AA seq
725 aa
AA seq
DB search
MAEDTPADTEATSAPIHDAREALRKHFGFRAFLDGQEAVIAATLSGQDVMIIMPTGGGKS
LCYQLPAMVMNGVTVVVSPLIALMKDQVDALQNRGIPATLINSTLSFEEQKDRINALRRG
EYKLVYVAPERFRSNMFVDTMRQVDIALFAVDEAHCLSQWGHDFRPDYLRLGDALERLGR
PQVLALTATATPEVRSDIQNTLKLRDPHVSVRGFSRPNLSLHITHTEKNKDKYERLRDIV
QHWKKGIVYCSTRKKVEEISALFDEWRIKAIAYHGGMDDKGREEAQNRFLQKKVEIAVAT
NAFGMGIDRSDVRFVVHYDVPGSIEAYYQEAGRAGRDGEPSHCELLFNYADTRTQEFFIE
GNNPSFETIRDVYQALLNDADNAHEVHATIEDITDRAGVKNSMAVSSALSMLGRQGYIER
FDIPGKRMRGTRLLQPKVLARGLEIDKAALAEKDRRDRSKLKSMVELCYADRCRQQVILE
YFGEKNASTCGNCDACKRGGLKATARAGTSEEVEVLRKALSGVARMSMRESDGTWTPRFG
RGRIVAMLTGSKSREVVDSGLDELSTYGILKNVGTAGVNQLFKEMEKQGMVETTMESDYP
LLRLTDKGAEVMRKGGSIRMQWPDLTKRVEMTKKSASGADDDEELVATELGFDEKLFDKL
KKKRLEIAQREGVPPYIIFNNSTLEFFTRLKPRTQTAALKIRGVGELKAMRWLPEFLEVI
KGHEG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atcgcggaagacacccccgccgacaccgaagccaccagcgcgccgattcacgacgcgcgg
gaggcactgcgcaagcacttcggtttccgtgccttcctcgatggccaggaagcggtcatc
gctgccaccttgagcggccaggacgtgatgatcatcatgcccaccggaggaggcaagtcg
ctgtgctaccagcttccggcgatggtgatgaacggcgtcacggtggtggtgagtccgctc
atcgcgctgatgaaggaccaggtggatgcactgcagaatcgcggcatcccggccacgctc
atcaacagcacgctctcattcgaagagcagaaggaccgcatcaacgccctgcgtcgcggc
gagtacaagctggtgtacgtggctccggagcgcttccgcagcaacatgttcgtggacacc
atgcggcaggtggacatcgcgctcttcgccgtcgacgaagcgcactgcctctcgcaatgg
ggccacgatttccgcccggactacctgcgtctcggtgatgccttggaacgcctgggccgc
ccccaggtgctggccctcaccgccacggccacgcccgaggtgcgctcagacattcagaac
acgctgaagctgcgcgatccgcatgtcagcgtgcgcggcttttcccggccgaacctgagc
ctgcacatcacgcacacagagaagaacaaggacaagtatgaacggctgcgcgacatcgtg
cagcactggaaaaagggcatcgtgtactgctccacgcgcaagaaggtggaggagatctcc
gcgctcttcgacgaatggcgcatcaaggccatcgcgtaccacggtggcatggatgacaag
ggccgcgaggaggcgcagaatcgcttcctgcagaagaaggtggagatcgccgtcgccacg
aatgccttcggcatgggcatcgatcgctcggacgtgcgtttcgtggtgcactatgatgta
cccggaagtattgaagcctattaccaggaggccggtcgtgccggtcgtgatggcgagcct
tcgcactgcgagctgctcttcaactatgcggacacgcgcacgcaggagtttttcatcgag
gggaacaatccctcgtttgaaaccatccgtgatgtgtatcaggcattgctcaatgatgca
gacaatgcgcatgaagtgcacgccacgatcgaagacatcacggatcgtgccggagtgaag
aactccatggcggtgagcagcgcgctgagcatgctgggacggcagggctacatcgagcgc
ttcgacattcccggtaaacgcatgcgcggcacacgtctgctccagcccaaggtgctggca
cgcggactggagatcgacaaggcagcgctcgcggagaaggatcgacgcgatcgttccaag
ctgaagtccatggtggagctgtgctacgcagaccgctgccgccagcaggtgatcctggaa
tacttcggcgagaagaacgccagcacctgtggcaactgcgatgcgtgcaagcgtggcggc
ctgaaagcgactgcgcgcgcgggcaccagtgaggaagtggaagtcctgcgcaaagccttg
agcggtgtcgctcgcatgagcatgcgtgaatctgatggcacctggacaccgcgcttcggc
cgcggtcgcatcgtggccatgcttaccggcagcaagtcccgcgaagtggtggactccggc
ctcgatgaactgagcacctacggcatcctgaaaaatgtgggcaccgccggtgtgaaccag
ctcttcaaggaaatggaaaagcagggcatggtggagaccaccatggagagcgactatccg
ctgctccgccttaccgacaagggcgccgaggtcatgcgcaaaggcggcagcatccgtatg
caatggcccgatctcaccaagcgcgtggagatgaccaagaagagcgcgtcaggggcggac
gacgacgaggaactggtcgccaccgagttgggcttcgacgagaagctcttcgacaagctc
aagaagaagcgcctcgagatcgcgcaacgcgaaggcgtcccgccctacatcattttcaac
aacagcacgctggaattcttcacgcgtttgaagccgaggacgcagactgctgcgttgaag
attcgcggggtgggggaactcaaggccatgcgctggctgccggagttccttgaggtgatc
aaggggcatgaggggtga
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