Rhodococcus opacus B4: ROP_02160
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Entry
ROP_02160 CDS
T00882
Name
(GenBank) RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
rop
Rhodococcus opacus B4
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rop03021
]
ROP_02160
Transcription machinery [BR:
rop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ROP_02160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
HTH_23
HTH_24
DUF7343
HTH_3
Sigma70_ECF
MarR
HTH_Tnp_ISL3
MarR_2
HTH_Crp_2
HTH_AsnC-type
LacI
HNH_repeat
Packaging_FI
KORA
HTH_7
Motif
Other DBs
NCBI-ProteinID:
BAH48463
UniProt:
C1ASL4
LinkDB
All DBs
Position
complement(188430..189227)
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AA seq
265 aa
AA seq
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MSPVSERSERHRPGRDDYKDVAPAVARLRILEESSGEASALRDEIITRCLPLADHIARRF
GGRGEAHEDLLQVARLGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPR
RMQELHALIAKAVDELSQELGRSPSASEIAAELELDVREVSEGLLAKNAYQTLSMDAAMG
DDPDDLPLAETLGEEDPELANVESHASVRPALEKLPPLERRVLMLRFFGSMTQTEIAQRV
GVSQMQVSRILARTLSGLREQLGGG
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaccggtttcggaacgcagcgaacggcaccgtcccggcagagacgactacaaggac
gtggcgcccgccgtggcgcgcctgcgaatcttggaggaatcgtccggggaggcgtccgcg
ctgcgcgacgagatcatcacacgttgccttccgctggccgatcacatcgcccgccgcttc
ggcggccgcggcgaggcgcacgaagatttgctgcaggtcgcccggctggggctggtgaag
gcggtcgaccgattcgacccggaccgcggcttcgacttcgtgtcctacgcggtacccacg
atcatgggtgaggtccgccgctactttcgcgacaccggctggtcgatgcgggtgccccgc
cgcatgcaggaactccacgcgttgatcgccaaggccgtcgacgaactgtcgcaggaactg
ggtcggtcgccgtcggccagcgagatcgccgccgaactcgaactcgacgtccgggaagtg
tccgagggcctgctcgcgaagaatgcctaccaaaccctgtcgatggatgcggccatggga
gatgaccccgacgacctacccctcgccgagacactcggcgaagaggaccccgagctcgcg
aacgtggagagtcacgcctcggttcggccggcgctggagaaacttccgccgctcgaacgc
cgagtgttgatgctgcgcttcttcggatcgatgacccagacggaaatcgcccagcgcgtg
ggcgtctcgcagatgcaggtctcgcggatcctggcacgcaccctgtccgggctgcgggag
cagctgggcggcggctga
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