Rhodococcus opacus B4: ROP_08540
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Entry
ROP_08540 CDS
T00882
Symbol
dnaQ
Name
(GenBank) putative DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03030
DNA replication
rop03430
Mismatch repair
rop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ROP_08540 (dnaQ)
03430 Mismatch repair
ROP_08540 (dnaQ)
03440 Homologous recombination
ROP_08540 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rop03032
]
ROP_08540 (dnaQ)
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_08540 (dnaQ)
Enzymes [BR:
rop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ROP_08540 (dnaQ)
DNA replication proteins [BR:
rop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ROP_08540 (dnaQ)
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ROP_08540 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BAH49101
UniProt:
C1AU93
LinkDB
All DBs
Position
896117..897883
Genome browser
AA seq
588 aa
AA seq
DB search
MSVPGVPEQLRFDELDTPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMAT
LVDPGRSIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAPFDTGFLKAA
AAATDTPWPKFTVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVD
VLHALIARVGNQGVHSLTELVDYLPDVSSHQRAKRTLASHLPHAPGVYLFRGPSDEVLYV
GTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYN
RRSKYPKRGWWITLTAEAFPRLSVVRTPAADSLGPFRSRSTAVDVADVLAEYCILRTCTS
RIPKGREHGAQCPPRELGRCPASVHGRNTEDAYRPGPELFRLFLRGADDAPLHRMRARVE
ELAAGELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAATGGWEFAVIRSGR
LASAGCARRGIHPMPVVDALVLTAETVVPDATPLRGASPEEAGLLARWLDQDDTRIVSAS
SGWCEPARGAGSWSAWCALARAGSASTRDAETRPPAPGSADHRLGWRS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtccccggcgtacccgaacagctgagattcgacgaactcgacaccccgctgcgg
gacaccacgttcgtggtggtcgacctcgagaccaccggagcgcggccgggcgaggacgcc
atcaccgagatcggggcggtgaagatccgcggcggcgaagtgatcgccgagatggccacc
ctcgtcgacccgggccggtccatcccgccgcacatcgtcgagatcacgggcatcaccacc
gcgatggtgatcgacgcaccgcggatcgagcgcgtgctgcccgcattcctcgagttcgca
cgcggagcggtgctcgtcgcccacaacgcccccttcgacaccggattcctcaaggccgcc
gccgcggccaccgacaccccctggcccaagttcaccgtgctctgcacggtcaaactggcc
cggcgcgttctcacccgcgacgaggcgccgtccgtgaagctgtcgtcgctggcccggctg
ctcgacgtcgggaccacccccacccaccgcgccctcgacgacgcccgcgccaccgtcgac
gtcctgcacgccctcatcgcccgggtcggcaaccagggagtgcacagtctcaccgagctc
gtcgactacctacccgacgtttcctcccaccagcgggccaaacgcacgctcgccagtcat
ctcccccacgctcccggcgtctacctgttccgcgggccgtccgacgaggtcctctacgtc
ggcacggcgaccgacctgcgccgccgggtgcgcaactacttcaccggctcagagacgcgc
ggccggatgaaggagatggtcgcgctgaccacccggatcgaccacgtcgaatgcgcgcac
gctctcgaggcgggggtgcgcgagctccggctgctcgccgcccacacgccgccgtacaac
cggcggtccaagtacccgaagcgcggctggtggatcacgctcaccgcggaggctttcccc
cggctgtcggtggtgcggaccccggccgccgattcgctcggaccgttccggtcccgctcg
accgccgtcgacgtcgccgacgtcctcgccgagtactgcattctccgcacctgcacgagt
cgcataccgaagggccgtgagcacggtgcgcagtgcccgccccgcgagctcgggcgctgc
cccgcgtccgtccacggccgcaatacggaggacgcctaccgccccggtccggaactcttc
cggctcttcctgcgcggcgccgacgacgcgccgctgcatcggatgcgcgcgcgggtggag
gaactggccgcgggcgagttgttcgagaacgccgcgcggctgcgggatcgcaccgcggag
gtcgtcctcgcactgcgcaggatgcagcgcctggcggcgctcaccgccctcgatcagctc
gtcgccgcgcgccccgccgcgacgggcggctgggagttcgcggtgatccgttccgggcgc
ctcgcgtccgcgggttgcgcccggcggggaatccacccgatgccggtggtcgacgcgctc
gtcctcacggccgagaccgtcgttcccgacgcgactccgctgcgcggcgcgtcccccgag
gaggccggactgctcgcgcgctggctcgaccaggacgacacccgcatcgtcagcgcgtcc
tcggggtggtgcgaacccgcgcggggcgccggatcctggtccgcgtggtgcgcgctcgcc
cgcgccggcagcgcgtcgacacgggacgccgagacccgaccacccgcaccgggttccgcc
gaccaccgcttaggctggcgatcatga
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