Rhodococcus opacus B4: ROP_15180
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Entry
ROP_15180 CDS
T00882
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ROP_15180 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_15180 (recD)
Enzymes [BR:
rop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ROP_15180 (recD)
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ROP_15180 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
AAA_22
SH3_13
TraI_hel_assoc_N
AAA_16
AAA_5
UvrD_C
DO-GTPase1
SRP54
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BAH49765
UniProt:
C1AXR1
LinkDB
All DBs
Position
complement(1613429..1615300)
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AA seq
623 aa
AA seq
DB search
MTEVQVAQRGKGMLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGS
VCLDLTRIREVTVDEESEVDLDALPWPEDSTVVAALRRSPLVTGGPAGPLRPLRLVDTAE
GGLLYLDRYFRQEATIRRVLDERAVGYPLVDERSLREGLDELFRDQHDHTAPAPSPDRQR
IAAAVAATQWTSVVVGGPGTGKTHTVARLLALLTRQPGPGRRIALAAPTGKAAARLQESV
REQADALGLPPELNAMTLHRLLGWQRGRGARFRFNANNHLPYDVIVVDETSMVSLTMMCR
LLAAVRPDTRLVLVGDPDQLTSVDAGAVLADLVARPVSGTENPVLGRVVGADLDAADDPL
EAALSASERDRLRGGVVRLSRGRRFGGGIAKLAVAVRDGEEELVIDILRGGGAPEVSFHG
PEDLDALRADVVATAAAVTDSAESGDASAALQHSEKHRLLCAHREGPYGVQRWARQAMEW
IGETTGQRLDPDRWYPGQPLMVTANDHETKIYNGDTGVIVRRDDDELFAAFVRGTEPFLL
HPTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAASSLLTRELLYTAITRARNHVRIIGT
EDAVRAGVQRRVLRASGLRRAIP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggtgcaggtggcgcagcgcggcaaggggatgctgcgggtcttcaacgaggcc
ggtgtgctggccgccgcggacgtacacgtcgcgctgcggttgtcggcgctcggcggcgaa
tcctcggaagacgtcgtgctggcgaccgcgctggcggtgcgcgcggtccggtccggctcg
gtgtgcctggacctgacgcggatccgggaagtcaccgtcgacgaggaatccgaagtcgat
ctcgacgccctgccctggccggaagactcgactgtcgtcgcggcactgcgccggagcccg
ctggtcacgggtggtcccgcgggaccgctgcgcccgctgcggctcgtcgacacggccgag
ggcggactgctctacctcgaccggtacttccggcaggaggcgaccatccggcgggtactc
gacgagcgcgccgtcgggtatccgctcgtcgacgagcggtcgctgagggaggggctggac
gagttgttccgcgaccagcacgaccacacggcgccggctccgtcaccggatcggcaacgg
atcgccgccgccgtggccgccacccagtggacgtcggtggtggtcggcgggccgggaacg
ggcaagacccacaccgtcgcccggctgctggcgttgctgaccaggcagcccggaccgggc
cggcgtatcgcgctcgccgcccccaccgggaaggccgcggcacggctgcaggagtctgtg
cgcgagcaggccgacgcactcgggttgccacccgaactgaacgcgatgacgctgcatcgg
ctgctgggctggcagcgtggacgcggcgcccggttccgcttcaacgcgaacaatcacctg
ccgtatgacgtgatcgtggtcgacgagacgtcgatggtgtcgctgacgatgatgtgccgg
ctcctcgcggccgtccgccccgacactcggttggtgctcgtcggcgacccggatcagctg
acgtcggtcgacgcgggcgcggtcctcgccgatctcgtcgcgcggccggtgtcgggaacc
gagaatccggtgctcgggcgagtcgtcggggccgacctcgacgccgccgacgacccgctc
gaggccgcgttgagtgcgagcgaacgggacaggttgcggggcggagtggtccggctcagc
cgcggtcggcgtttcggcggcggtatcgcgaaactggctgtcgcggtgcgggacggcgag
gaagaactggtgatcgacattctgcgcggcggcggtgcccccgaggtgtcgttccacggt
cccgaagatctggacgcactgcgggcggacgtggtggcgacggccgccgcggtcacggat
tccgcggaatccggcgatgcctccgctgcgctacagcattcggagaaacaccggctgttg
tgcgcgcaccgggaaggtccgtacggagtgcagcggtgggcgcggcaggcgatggagtgg
atcggcgagacgacgggacagcgactggacccggatcgctggtatccgggtcagccgctg
atggtgactgccaatgaccacgagacgaagatctacaacggcgacaccggagtgatcgtg
cgtcgggacgacgacgaactcttcgccgcgttcgtgcggggcaccgaaccgttcctgttg
catccgacgcatctgtccgcggttcagacggtgtatgcgatgacgattcaccgcagtcag
ggcagccagtacgacacggtgtccgtggtgctgcccggtgcggcgtcgtcgctgctgacc
cgagaattgctgtacaccgcgattacccgggcgcggaaccacgtgcggatcatcgggacc
gaggatgcggtgcgggcgggagtgcaacgccgggtgctgcgagcgagtgggcttcggagg
gcgattccatag
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