Rhodococcus opacus B4: ROP_25300
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Entry
ROP_25300 CDS
T00882
Symbol
fadB
Name
(GenBank) fatty oxidation complex alpha subunit
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop00071
Fatty acid degradation
rop00280
Valine, leucine and isoleucine degradation
rop00310
Lysine degradation
rop00362
Benzoate degradation
rop00380
Tryptophan metabolism
rop00410
beta-Alanine metabolism
rop00640
Propanoate metabolism
rop00650
Butanoate metabolism
rop00907
Pinene, camphor and geraniol degradation
rop00930
Caprolactam degradation
rop01100
Metabolic pathways
rop01110
Biosynthesis of secondary metabolites
rop01120
Microbial metabolism in diverse environments
rop01200
Carbon metabolism
rop01212
Fatty acid metabolism
Module
rop_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
ROP_25300 (fadB)
00650 Butanoate metabolism
ROP_25300 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
ROP_25300 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
ROP_25300 (fadB)
00310 Lysine degradation
ROP_25300 (fadB)
00380 Tryptophan metabolism
ROP_25300 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
ROP_25300 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
ROP_25300 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
ROP_25300 (fadB)
00930 Caprolactam degradation
ROP_25300 (fadB)
Enzymes [BR:
rop01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
ROP_25300 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
ROP_25300 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
ROP_25300 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
ECH_2
3HCDH
DAO
NAD_binding_2
F420_oxidored
AlaDh_PNT_C
Pyr_redox_2
NAD_binding_8
Sacchrp_dh_NADP
GIDA
Motif
Other DBs
NCBI-ProteinID:
BAH50777
UniProt:
C1B3S9
LinkDB
All DBs
Position
complement(2719597..2721804)
Genome browser
AA seq
735 aa
AA seq
DB search
MSHNPIIRWERDDDGIVVLTIDDPTQRVNTMNAGFVDALEAALDRIETERDTITGVVVTS
GKDTFFAGGDLNDLRDASKDRIDEFATFVDRNSALLRRLETIGRPVVAAVNGSALGGGLE
LALATHHRVALDGPRNYVGLPEVTLGLLPGAGGVVRSVRMLGVERALSELLLQGQRRTVR
SARELGIIDELVESRSELVAVSKKWIIANPDAAQPWDVKGYRIPGGTPGDRNEQLHSRLP
AIPALLRKQSKGANYPAPQNIVAAAVESTQIDFDNALRVEARYFLDLATGQVAKNMIQAF
FFDIQSVNGARGRSADRTPWRARKVVVLGAGMMGAGIAYECARAGIDVVLKDVTLEAAER
GKGYSHKLVDKQVAAGRTSKDKGEALLARITPTDRAEMADGADLVIEAVFEDPAVKAQVL
AEIEPYLADGALIGSNTSTLPITGLAENVPRPEDFIGLHFFSPVDRMPLLEIIKGEKTSA
DTLSRALDLAKQIAKTPIVVNDSRGFFTSRVIGTFINEALALLGEGVPATTIEQASSQAG
YPAPVLQLTDELNLELLRRVRDASMQAAQDAGQAWIGHPAEAVLDRMLSEFGRAGRLAGA
GFYEYDENRKRTRLWTGLSDAFGGANADIPFDDVVERLLFAEVIETVKCLDEGVLEAVPD
ANVGSILGIGFPGWTGGVLQFVDGYEGGVAGFVARARYLAETYSDRFTPPESLLQLTESG
TTLARFRSAELVGTP
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagccacaacccgatcatccgctgggaacgtgacgacgacggaatcgtcgtgctcacg
atcgacgacccgactcagcgcgtcaacacgatgaatgccggcttcgtcgacgcgctcgag
gcagccctcgaccgcatcgagaccgaacgcgacaccatcaccggcgtcgtcgtcacgtcc
ggcaaggacaccttcttcgccggcggagatctcaacgatctccgggatgcatcgaaggac
cgcatcgacgagttcgcgacgttcgtcgaccggaacagtgcgctgctgcgccgcctcgag
acaatcggacggcccgtcgtcgcggcagtcaacggttcggcgctcggcggcggactcgaa
ctcgcgctggccacccaccatcgcgtcgcactggacggtccgcggaactacgtcggactg
cccgaagtgaccctcggcctgctgcccggcgccggcggcgtcgtgcgctcggtgcggatg
ctcggcgtggaacgtgcgctctcggaactccttctgcaggggcaacgtcgcaccgtccgg
tcggcacgtgaactcgggatcatcgacgagctcgtcgagtcgcggtcggaactggttgcc
gtgtcgaagaaatggattatcgcgaacccggacgctgctcagccgtgggacgtgaagggc
taccgcattcccggcggaacacccggcgaccggaacgaacaactgcactcccgcctcccg
gcaatacccgctctactgcgcaaacagtcgaagggagcgaactacccggccccgcagaac
atcgtggcggcagcggtggagagtacccagatcgatttcgacaacgcgctgcgggtggag
gcccgttacttcctcgacctcgcgactgggcaggtcgccaagaacatgatccaggccttc
ttcttcgacatccaatcggtgaacggcgcccgcgggcgcagcgccgatcgcacgccctgg
cgcgcacgaaaggtcgttgtcctcggggcgggcatgatgggcgccggaatcgcatacgag
tgcgcccgcgccggcatcgacgtcgtcctgaaggacgtgacactcgaggccgccgaacga
ggcaagggatactcgcacaagctggtcgacaagcaggtcgctgcggggaggacctcgaag
gacaagggcgaggcacttctcgcccgcatcacgcccaccgaccgcgcggaaatggccgac
ggcgccgatctggtgatcgaggcagtgttcgaggatcccgccgtcaaagcccaggtgctc
gccgagatcgaaccgtacctcgccgacggcgccctcatcggatcgaacacgtccaccctg
cccatcacggggctggccgagaacgtcccccgacctgaagacttcatcggactccacttc
ttcagccccgtcgatcgcatgccgctgctggagatcatcaagggggagaagacctccgcc
gacacgctgtcgcgggcactggacctggcgaagcagatcgcgaagaccccgattgtcgtc
aacgacagccggggattcttcacgagccgcgtgatcggtacgttcatcaacgaggccctg
gcgttgctcggcgagggtgtcccggcgacgacgatcgaacaggccagttcgcaggccgga
tacccggctcccgtgctgcagctgaccgacgaactgaacctcgagctgctgcgtcgggtt
cgtgacgcgagcatgcaggccgcgcaagacgccggtcaggcctggatcggtcaccccgcc
gaggccgtgctcgaccgcatgctgtccgagttcgggcgggcaggccggctggccggagcc
ggattctacgaatacgacgagaatcgcaaacgtactcggctctggaccggtctgtcggat
gctttcggcggtgcgaatgccgacatcccgttcgacgatgtggtcgagcggctgttgttc
gccgaggtcatcgagaccgtgaagtgccttgacgagggagtcctcgaagcggttcccgac
gccaacgtcggctcgatcctcggtatcgggttccccggatggacgggcggagtcctgcag
ttcgtcgacggatacgagggcggtgtcgcgggcttcgtcgcccgagcccgatacctcgcc
gagacctacagcgaccgcttcacgccgcccgaatcacttctccagttgacggaatcgggc
acgacgctcgcacggttccgatccgccgaattggtcggcaccccctag
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