Rhodococcus opacus B4: ROP_50180
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Entry
ROP_50180 CDS
T00882
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
ROP_50180
09124 Replication and repair
03420 Nucleotide excision repair
ROP_50180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rop03021
]
ROP_50180
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_50180
Enzymes [BR:
rop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROP_50180
Transcription machinery [BR:
rop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
ROP_50180
DNA repair and recombination proteins [BR:
rop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
ROP_50180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
BAH53265
UniProt:
C1ATK1
LinkDB
All DBs
Position
complement(5423350..5425029)
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AA seq
559 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLTEVT
RHKKIAPMLGARVDDDTVVVHPSERGRLKQLLLKVGWPAEDLAGYVDGEAHPIDLDFDGT
SPGSADGHWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNT
VAGRQWKRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRRTKGEYKHLELFDSRD
WGLVIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD
IEAQGWIAPADCVEVRVTLTDAERMAYAVAEPDERYKLCSTAHTKIAVVKSILERHTDAP
TLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAGEIQTLVVSKVANFSIDLP
EASVAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAE
QGYAYRITDADDLLGPAIG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggaccgttgatcgtccaatccgacaagaccctgctgttggaggtcgatcac
gaacgagcgaacgacgcccgccaggcgatcgccccgttcgcggaactcgagcgcgcgccc
gaacacgtccacacctaccgcatcacgccgctggcgctgtggaacgcgcgcgccgccggg
cacgacgccgagcaggtggtcgacgcgctggtcaacttctcccggtacgccgtgccgcag
ccgctgctggtcgacatcgtcgacacgatggcccggtacgggcgcctgcagctggtgaag
aatcccgcccacggcctgacgctggtcagcctcgaccgcgcggtcctcaccgaggtgacc
cggcacaagaagatcgccccgatgctcggggcccgcgtcgacgacgacacggtggtcgtc
cacccgagtgagcgcggccggctcaagcagctgctgctcaaggtcggctggccggcggag
gacctcgccgggtacgtcgacggcgaggcccaccccatcgatctggacttcgacggcacc
tcccccgggtccgcggacggccactggcacctgcgcgactaccaggagatggcggccgat
tcgttctgggccggcgggtccggcgtcgtcgtcctgccgtgcggtgcgggcaagacgatg
gtcggtgcggcggcgatggccaaggcgaaggccaccacgttgatcctggtgacgaacacg
gtcgcgggacggcagtggaagcgtgagctgatcgcgcgcacgtcgctcaccgaggaggag
atcggcgagtactccggcgaacgcaaggagatccgcccggtcacgatcgccacgtaccag
gtgatcacccggcgaacgaagggcgagtacaagcatctcgaactgttcgattcccgcgac
tggggtctggtgatctacgacgaggtgcacctgctgcccgcgcccgtgttccggatgacc
gccgacctgcagtcccgccggcgcctcgggctcaccgccaccctggtgcgcgaggacggc
cgcgagggcgacgtgttctcactgatcgggccgaagcggtacgacgcgccgtggaaggac
atcgaggcgcaggggtggatcgcccccgccgactgcgtcgaggtgcgggtgacgctgacg
gacgccgaacgcatggcgtacgccgtcgccgaacccgacgagcgatacaagctgtgttcc
accgcacacaccaagatcgcggtggtgaagtcgatcctggaacggcacaccgacgcaccg
acgttgatcatcggcgcgtacctcgatcagctcgacgaactgggtgaggcgttgaacgcc
ccggtcatcaaggggtcgaccaagaacaaggagcgggaggagctgttcgaccgtttccgg
gcgggcgaaatccagacgctggtggtcagcaaggtcgcgaacttctcgatcgaccttccg
gaagcgtctgtcgccgtgcaggtttcgggtacgttcgggtcccgacaggaggaggctcag
cggctggggcgcctcctgcggcccaagcacgacggcggtcaggcccacttctactcggtg
gtggcgcgggacacgctcgacgcggagtacgccgcccaccggcagcgcttcctcgccgag
cagggttacgcctatcggatcaccgacgccgacgacctgctgggcccggccatcgggtga
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