Rhodococcus opacus B4: ROP_58240
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Entry
ROP_58240 CDS
T00882
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROP_58240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_58240 (mfd)
Enzymes [BR:
rop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROP_58240 (mfd)
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ROP_58240 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
DUF3638
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAH54071
UniProt:
C1AY76
LinkDB
All DBs
Position
6367443..6371090
Genome browser
AA seq
1215 aa
AA seq
DB search
MSSPLIAAEPSSDTPLAGLAKIALGDAVVAQVTEALGRRHLDIVAPAPARPFVAAALAER
THLLLVTATGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLA
RPDDRSYGAPLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRV
DMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIA
PPCRELLLTEDVRDRAAQLAVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLL
TDVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLKGDGIDL
GASAYRTLSQVRESAETAGLPWWTLSPLASGSGEELELAITPAPQVRGSDELLSELFVSL
RAHVSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELTPGSEPARGQVGVLRGSLHDGLV
FPGGDTTPGLVVVTESDLTGNRVAAVGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDLYVRLVGEAVEAFRAAADGKPITTDDAPKEVRIDLPVDAHIPPDYVTSDRLRLEG
YRKLAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEIAVVGTQLK
ISPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADLV
LALDGKAAGSVVMEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctgccgagccctcgtccgacaccccgctcgccggactggcg
aagatcgcgctgggcgacgccgtcgtcgcgcaggtgaccgaggccctcgggcggcgtcac
ctcgacatcgtcgcgcccgcacccgcccggccgttcgtggccgcggccctcgccgagcgc
acgcatctgcttctggttaccgcgaccggtcgcgaggccgacgacctcaccgccgaactg
caggagatgatcggcgacgcggtggcgcagttcccgtcgtgggagacgttgccgcacgag
cggctgtcgccgagcgccgacacggtcggtcgccgggtggaggtgctccgcaggctcgcg
cggcccgacgaccgctcctacggcgccccgctccaggtcgtcgtcaccaccgtccgttca
ctggtgcagcccatggcgcccggtctcggtgagatcgaacccgtcacgctccgggtgggc
gtggagcacgacttcgacgggctgatccagcggctcgtcgaaatggcgtacacccgcgtc
gacatggtcggcaagcgcggagagttcgcggtccgcggcggcatcctggacctgttctcg
cccaccgcggatcatccggtgcgcgtcgagttctggggcgacgaggtcaccgagttgcgc
gcgttctccgtcgccgaccagaggtcgctcgccgaactcgacatcgacgccgtgatcgcg
ccgccgtgccgcgagctgctcctcaccgaggacgtccgcgaccgggccgcgcagctcgca
gtcgacaaccaggccgacgccgcgctcgtcgagatgctcgacaagatgtcggccggcatc
ccggtggaaggcatggaggcactgctgcccgtgctgcggccggggcagctgcaactgctc
accgacgtgctgcccgagagcgcgcacgtgctcctgtgtgatccggagaagatccggacc
cgcgccaccgacctggtgcgcaccggtcaggagttcctcgaggcgtcgtggacggcggcc
tcgatcggcggcgccgcccccctcgacacgtcggtgctgaagggcgacggcatcgacctc
ggcgcctccgcctaccggacgctgagccaggtccgcgaatccgcggagaccgccggtctg
ccgtggtggacgctgagcccgctcgcgtccggaagcggtgaggaactggagctggcgatc
acgccggcaccccaggtccgcggttccgacgagctgctgtccgaactgttcgtgagcctg
cgcgcccacgtcagcacgggcggccgggccgtcatcgtcgtcgcaggcgccggtaccgcg
caccgcgtgctcgagcgtctccgcgaggccgaggtgcccgcggcggaactcacgcccggt
tcggagcccgctcgcggtcaggtcggggtgctgcgcgggtcgctgcacgacggcctggtc
ttccccggcggcgacaccacccccggactcgtcgtcgtcacggagtccgatctcaccgga
aaccgggtggccgcggtcggcgacggcaggcggctgccggccaagcgccgcaaccaggtg
gacccgctggccctgacggccggcgacatggtggtgcacgaccagcacggcatcgggcgg
ttcgtcgagatggtcgaacggaccatcggcggcgcgcggcgcgagtacctcgtgatcgag
tacgccgccagcaagcgcggccacccgggcgaccggctgttcgtcccgatggagtcgctc
gaccagctgtcgcggtacgtcggaggtgagctgcccgcgctcagcaagctcggcggctcc
gactgggccaacaccaaacgcaaggcgcgcaaggcggttcgggagattgccggtgagctc
gtccagctgtatgcggcacggcaggccgcgcccggtcacgcgttcggcccggacaccccg
tggcagaaggagatggaggacgcgttcgcgttcaccgagacccatgaccagctgaccgtc
atcagcgaggtcaaggccgacatggagaaggccgtcccgatggaccgcgtcgtcatcggc
gacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggccgtgcaggac
ggcaagcaggtggcggtgctggtgccgacgacgctcctcgcccagcagcacctccagacg
ttcaccgagcgcatggcggcgttcccggtcaaggtgcgcgggctctcccgcttcacggat
gcgggcgaatccaaggagatcgtcgcgggcatggccgacggcgagatcgacgtggtggtc
ggcacgcaccggctgctgcagaccgcggtccggtggaaagacctgggcctcgtgatcgtc
gacgaggagcagcgtttcggtgtggagcacaaggagcacatcaaggcgctgcgcacccac
gtggacgtgctcaccatgtcggcgacgccgatcccgcgaacgctggagatgagcatggcg
ggcatccgggagatgtccacgatcctcacgccgccggaggagcggcaccccatcctcacc
tacgtcggcgcgtacgccgacaagcaggtggccgccgccatccgacgggaactgctccgc
gacgggcaggtgttctacgtccacaaccgggtcagctcgatcgacaaggcggcccagcgc
atccgcgaactcgtgcccgaggcgcgcgtcgtcgtcgcacacggacagatgaacgaggac
accctcgaacggaccgtgcagggtttctgggaacgcgactacgacgtgctggtgtgcacc
accatcatcgagaccggtctcgacatctccaacgccaacacgctgatcgtcgaacgcgcc
gattccctcggcctgtcgcagctgcaccagttgcgtggtcgcgtcggccgtagccgggaa
cgcggctacgcgtacttcctgtacccgccggagaagccgctgaccgagacggcctacgac
cggctcgcgaccatctcgcagaactccgacctcggcgcaggcatggcagtcgcgatgaag
gacctcgagatccgtggtgccggaaacgtgctgggggccgagcagtccggtcacgtggcc
ggtgtcggcttcgacctgtacgtgcgactggtgggggaggccgtcgaggcgttccgcgcg
gccgcggacggaaagccgatcaccacggacgacgccccgaaggaagtgcgcatcgacctg
cccgtcgacgcgcacatcccgccggattacgtcaccagcgaccggctccggctcgagggg
tatcgcaagctcgcggccgccaccgaactcgacggcatcaccgccgtcgtggacgaactc
gtcgacaggtacggccccctccccgaggaggtccgcaggctggtgtcggtggccaaactg
cggctgctggcccgcgagtacgggctcgaggagatcgccgtcgtcggcacgcagctgaag
atctcgccgatggcactgcccgactcgaagcagttgcgtctcaagcggatctacccgagt
gcgcagtaccgtgccaccaccggcatggtgcagctgccgctgccccgggcaggctcgggc
gggatcggcgcggagcgggtgcgcgacgtggagttgctgcagtacatcgcggatttggtg
ctcgcgctggacggcaaggccgccgggtccgtggtgatggaggcctga
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