Rhodococcus opacus B4: ROP_60020
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Entry
ROP_60020 CDS
T00882
Name
(GenBank) putative uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ROP_60020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rop03400
]
ROP_60020
Enzymes [BR:
rop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
ROP_60020
DNA repair and recombination proteins [BR:
rop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ROP_60020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
TAF1C_HB
Rpn9_C
Motif
Other DBs
NCBI-ProteinID:
BAH54249
UniProt:
C1AZH8
LinkDB
All DBs
Position
complement(6563113..6563826)
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AA seq
237 aa
AA seq
DB search
MGAALTDIAGLDAQLIECRACPRLVEWREQVAREKRASFRDETYWGRPVPGFGPADAPLL
IVGLAPAAHGANRTGRMFTGDRSGDFLYAALHAVGLASQPTATHIGDGLELFGVRITSPV
HCAPPANKPTPEERDNCRRWLDAELRILQPGLRSVIVLGGFGWQSLLPVLDDAGWAVPRP
RPKFGHGAHVELAGPERPLHLFGCYHVSQQNTFTGRLTPAMLESVLSDAARVAGLSG
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgcggcgctgaccgatatcgccggcctggacgcacagttgatcgaatgccgggcc
tgcccccgcctcgtcgagtggcgggagcaggttgcgcgcgagaaacgcgcctcgttccgc
gacgaaacctattggggccggcctgttcccggattcggtccggccgacgcgccgctgctg
atcgtcggtctcgcccccgccgcgcacggcgcgaaccggaccgggcgcatgttcaccggc
gatcgcagcggcgacttcctctacgccgccctgcacgccgtgggtctggcgagccagccc
accgccacccacatcggcgacggcctcgaactgttcggcgtccggatcacgtccccggtg
cactgtgcgccgcccgcgaacaagcccacccccgaggaacgcgacaactgccgccgctgg
ctcgacgccgaactgcgcatcctgcaacccggcctgcggtcggtgatcgtgctcggcggg
ttcggctggcaatcgctgctgcccgtcctcgacgacgccggctgggccgtcccccggccg
cgacccaagttcgggcacggtgcgcacgtcgaactggccggccccgaacgtcccctgcat
ctgttcgggtgctatcacgtcagccagcagaacacgttcaccggccggctcacccccgcc
atgctcgagtcggtgctctccgacgccgcacgggtggccgggctgagcggctga
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