Rhodococcus opacus B4: ROP_60970
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Entry
ROP_60970 CDS
T00882
Symbol
deaD
Name
(GenBank) ATP-dependent DEAD-box RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rop
Rhodococcus opacus B4
Pathway
rop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROP_60970 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rop03019
]
ROP_60970 (deaD)
03009 Ribosome biogenesis [BR:
rop03009
]
ROP_60970 (deaD)
Enzymes [BR:
rop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROP_60970 (deaD)
Messenger RNA biogenesis [BR:
rop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROP_60970 (deaD)
Ribosome biogenesis [BR:
rop03009
]
Prokaryotic type
rRNA helicases
ROP_60970 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAH54344
UniProt:
C1AZS3
LinkDB
All DBs
Position
6666284..6668047
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AA seq
587 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILS
DTPEYKQVALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQEL
ATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALR
RTRISGVLIQLQPDSGPPSGRPGRGGRDDRAGGKFQRDRDNRKRPRE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgagcgtgaccccgaaccccccacttttgccgacctcgacatcgacgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggccgcc
accattccgccgctcctcgcaggcaacgacgtcgtcggcctggcacagaccggcaccggc
aagaccgctgcgttcgcggtgccgatcctctcgaagatcgacctcacgcagaagtcgccg
caggcgttggtcctcgcaccgacccgcgaactggccctgcaggtcgcggaggcgttcggc
aagtactccgcccacatcccgggcctgcacgtcctgccgatctacggcgggcagagctac
ggcgtccagctgtcggggctccggcgcggcgcgcacgtcgtcgtgggcacgcccggtcgc
gtgatcgaccacctcgagaagggcaccctcgacctgtccaagctcgcctacctcgttctg
gacgaggccgacgagatgctgaagatgggattccaggaggacgtcgagcgcatcctctcc
gacactcccgaatacaagcaggtcgccctgttctcggccaccatgccgggtgccatccgc
aagatctcgaagcagtatctgcacgacccggtcgagatcacggtgaagtcgaagacgtcg
actgcgtccaacatctcgcagcggtacgtccaggtggcgcaccagcgcaaactcgacgcc
ctcacgcgtgtcctcgaggtcgaggacttcggggccatgatcatcttcgtgcgcaccaag
caggccaccgaagacctcgcggaacgactgcgttcgcgcggcttctcggcggcggccatc
aacggcgacatcgtgcaggcccagcgtgagcggaccatcggccagctcaagagcggcgcc
ctcgacatcctcgtggccaccgacgtggccgcacgtggcctcgacgtcgaccgcatctcc
cacgtcgtcaactacgacatcccgcacgacacggagtcctacgtccaccggatcggccgc
accgggcgcgccggtcgcgcgggcgaggcgctgctgttcgtggcgccgcgcgaacggcac
ctgctcaaggccatcgagaaggcgacccgtcagccgctcgccgagatgcagctgccgagt
gtcgacgacgtcaacgcacagcgtgtgtccaagttcggcgactcgatcaccgagagcctg
acatccgacaacctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gttccgctcgccgacatcgccgccgcgctcgcggtgcagtcgcgtgacggggaggcgttc
ctcatggcgcccgaaccgccgcccgcaccccgccgtgaacgtgagccccgcgaacgcccg
gcgcgccgtttcgacgacggccccccgacccgctcgcgtggaccggaaggccaggagctc
gcgacgtaccgcatcgccgtcggcaagcggcaccgggtggtgccgggcgcgatcgtcggt
gccatcgcgaacgagggtgggctgcggcgcagcgacttcgggcacatcagcatccgcccg
gaccacagcctggtggagttgcccgccgacctgtccagcgaaaccctcgaggcgctgcgc
cgtacccggatctccggggtgctgatccagctgcagcccgattcggggccgccgtcgggt
cgtccgggtcgtggcggccgcgacgatcgggccggcggaaagtttcagcgcgaccgggac
aacaggaaaaggccgcgcgagtag
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