Rhodococcus opacus B4: ROP_67770
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Entry
ROP_67770 CDS
T00882
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rop
Rhodococcus opacus B4
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rop03019
]
ROP_67770 (hrpA)
Enzymes [BR:
rop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ROP_67770 (hrpA)
Messenger RNA biogenesis [BR:
rop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ROP_67770 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
SLFN-g3_helicase
AAA_25
AAA_30
T2SSE
TsaE
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BAH55024
UniProt:
C1B3A7
LinkDB
All DBs
Position
complement(7391930..7395817)
Genome browser
AA seq
1295 aa
AA seq
DB search
MSTTAPSRRELKNSLGELTLRDEHRLRRRLDRARTPDALASLSDEIDAARARVTRRLGSV
PTIDYPDALPVSRRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHT
QPRRLAARTVAERIAEELHSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRML
RRYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPERFAEHFAADGVPA
PIVEVSGRTFPVEMRYRPLTVEVGEQTFDRDPVDAVCEAVEELSGEGDGDILVFLSGERE
IRDTADALRDRRLRGTEIVPLYARLSAAEQHKVFTPHTGRRVVLSTNVAETSLTVPGIRY
VVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDFESRPA
FTEPEILRTNLASVILQMTALGLGDVAAFPFVQPPDPRAVRDGIGLLEELGAIERKAQNE
QPVLTSVGRELAQIPVDPRMARMLVEAHRNGCLSEVLVIVAALSIQDVRERPAEFQQAAD
EKHARFTVENSDFLAFLELWKYLREQRNELSSNQFRKMCRNEFLHWLRIREWQDLHGQLR
QITRGLGWETTGTPAGEAAIHQSLLAGLLSHIGLREGDKRDFLGARGSRFAVFPGSSLFK
KPPRWVMAAELVETSRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGAAMAYERV
TLYGIPLVARRAVTYSTIDPETSRDLFIRHALVQGEWQTQHKFFHANRALLEDVEELEHR
ARRRDILVDDDTLYDFYDQRVGPEAVSARHFDSWWKVARRTNPDLLTFTQSTVVNADSAA
VLGGEYPDAWRQGDMQVPLTYQFEPGNEDDGVTARIPIALLAGLRPVGFDWLVPGMRVDL
VTALIKTLPKTLRRQVVPAPDFAAAALAAVKPRSEPLTTAMARELSRLGACRIDPKDFDV
TALPDHLRMTFVAVDEKGAVLGRNKDLASLRKSLAPRVQVEVAKAASNSERPPALTWTPA
TLGTLEATVTRELGGQKVTGYPALVPEGDGVAVRVLSTAAAQRAAMRDGTRRLLLAAVPT
QAKTVTSGLSNAQRLALGQNPDGSLDALIDDCRTAAANQLIAAHGTSVRTPQEFDALVAK
ARAEMARTVAVLVRLVSPVLEADHRLAVVLDRATGEAADDVREQRQSLLFPGFVADIGAT
RLRELPRYLAAAVARLEALPGSAPRDQKGMDALDRVYAGYERMLAGLPEERQHSPEVDAI
HWMIEELRVSLFAQTLGTPIPVSEKRVLSAMQKVR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacagcacccagccggcgggaactgaagaacagcctcggcgaactcactctg
cgcgacgaacaccggctccgccggcgactcgaccgtgcccgcactcccgacgccctcgcc
tccctgtccgatgaaatcgacgccgcacgcgcccgcgtcacccggagactcggcagcgtc
cccacgatcgactaccccgacgcactgccggtcagccggcgccgcgacgacatcgcgaaa
gcgatcgccgagaatcaggtcgtcatcgtggccggcgagacgggatccggcaagacgacg
cagatcccgaagatctgcctcgaactcggccgtggcgtccgcgggctcatcggacacacc
cagccccgccgtctcgcggcccggacggtcgccgaacgcatcgccgaggaactccacagc
gaactcggcgagaccgtcggctacaccgtgcgattcaccgaccaggtgtcggacggcacg
ctggtgaagctgatgaccgacggaatcctgctcgccgagatccagcgcgaccggatgctc
cgccgatacgacaccctcatcatcgacgaggcccacgaacgcagcctcaacatcgacttc
atcctcggatacctgcggcagctgctcccccgcaggcccgatctgaaagtgatcatcacg
tcggcgacgatcgacccggaacgcttcgcggaacacttcgccgccgacggcgtgcccgcg
ccgatcgtcgaggtgtccgggcgcacgttccccgtcgagatgcggtaccgcccgctcacg
gtggaggtcggcgagcagacgttcgaccgcgaccccgtcgacgcggtgtgcgaggcggtc
gaagagctctccggcgagggcgacggcgacatcctcgtcttcctctccggcgaacgggag
atccgcgacaccgccgacgccctccgagaccgcagactgcgcggcaccgagatcgtgccc
ctgtacgcacgactgtcggctgcggaacagcacaaggtgttcaccccccacaccgggcgg
cgggtcgtgctgtcgacgaacgtcgcggaaacctccctcaccgtgcccggcatccggtac
gtcgtggacccgggcaccgcccgcatctcccgctactcggtgcgcaccaaggtgcaacgc
ctgccgatcgaaccgatctcgcaggcctccgcccgccagcgttccggtcgttgcggccgt
gtcgccgaaggcatctgcatccgcctgtactccgaggaggacttcgagtcccggcccgcg
ttcacggagccggagatcctgcgcaccaacctcgcgtccgtcatcctgcagatgacggca
ctcggcctcggcgacgtcgccgcgttcccgttcgtgcagccgccggacccgcgcgccgtc
cgcgacggcatcggcctgctcgaggaactcggagcgatcgaacggaaagcccagaacgag
caacccgtcctcacgtcggtcggacgcgaactcgcgcagatccccgtcgatccgcgcatg
gcccggatgctcgtcgaggcgcaccggaacggctgcctgtccgaggtgctcgtgatcgtc
gccgccctctccatccaggacgtgcgcgaacgtcccgccgagttccagcaggcggccgac
gagaagcacgcccggttcaccgtggagaattccgacttcctcgctttcctcgaactgtgg
aagtacctgcgcgagcagcggaacgagttgtcgtcgaaccagttccgcaagatgtgccgc
aacgaattcctgcactggctgcgcatccgcgaatggcaggacctgcacggtcaactccgc
cagatcacccggggtctcggctgggaaaccaccggaaccccggcaggcgaagcggccatc
caccagtctctcctcgccggactgctgtcgcacatcgggctgcgcgagggtgacaaacga
gacttcctcggggcgcgcggaagccgattcgcggtcttccccggctcgagcctgttcaag
aagccgccgcgatgggtcatggccgccgaactggtcgagacatcccggctgtgggcgcgg
atgtcggccaggatcgaacccgaatgggccgagaagctggcgccgcacctcgtgaaacgg
acgtactccgaaccacactggtcatcgaaacgcggcgccgccatggcctacgaacgcgtg
acactgtacgggatccctctcgtcgcccggcgtgcggtcacctacagcaccatcgacccc
gagacgtcccgggacctgttcatccgccacgccctggtgcagggtgaatggcagacccag
cacaagttcttccacgccaaccgcgcactcctggaggacgtcgaagaactcgagcaccgc
gcccgcaggcgcgacatcctcgtcgacgacgacaccctctacgacttctacgaccagcgc
gtgggtccggaggcggtctccgcccggcatttcgactcctggtggaaagtcgcccgccgc
acaaatccggatctgctcacgttcacccagtcgacggtcgtcaacgccgattcggccgcg
gtactcggcggcgaataccccgacgcgtggcgtcagggtgacatgcaggtcccgctcacc
taccagttcgagcccggcaacgaagacgacggcgtcaccgcccgcatcccgatcgcgctg
ctcgcggggctgcgccccgtcggcttcgactggctggtccccggtatgcgcgtcgacctg
gtcaccgcgctgatcaagacgctcccgaaaacccttcgccgacaggtggttccggcaccg
gacttcgcggccgccgcactggccgcggtgaaaccccgctccgaaccgctcaccacggcg
atggcacgcgaactgtcccggctcggcgcctgccgcatcgatcccaaggatttcgacgtc
acggcactccccgaccacctgcgcatgacgttcgtcgccgtggacgagaagggtgccgtc
ctcggccggaacaaggacctcgcgtcgctacgcaagtcgctcgccccccgcgtccaggtg
gaggtggcgaaggcggcgtcgaactcggagcggccccccgcactcacgtggacacccgcc
accctcggtaccctcgaggccaccgtcacacgcgaactcggggggcagaaggtcaccggc
taccccgccctggtccccgagggtgacggtgtcgccgtccgcgtcctcagcaccgccgcc
gcccagcgagccgcgatgcgcgacggaacgcgccgcctgctgctggccgccgttcccacc
caggcgaagacggtgacgtccggcctgagcaacgcgcagcgactggcgctcgggcagaac
cccgacggcagcctcgacgccctgatcgacgactgccgcaccgccgccgcgaaccagttg
atcgccgcacacggcacctccgtacgcacaccgcaggaattcgacgctctcgtcgcgaaa
gcgcgcgcggagatggcccggaccgtggcagtcctcgtgcgactcgtgtcacccgtgctc
gaggcggaccaccgactcgccgtcgtgctggaccgcgcgaccggagaggccgccgacgac
gtgcgtgaacaacggcagtcgctgctctttcccggattcgtcgccgacatcggcgccacc
cgtctccgcgaactgccccgctacctcgcggccgccgtcgcacgtctcgaagccctgccc
gggagcgcaccgcgcgaccagaaggggatggatgccctcgatcgggtgtacgccggatac
gaacgcatgctcgccggcctgccggaggaacggcagcattcacccgaagtcgacgcgatc
cactggatgatcgaggaactgcgcgtcagcctgttcgcgcaaacactcggaaccccgatc
ccggtctccgagaaacgggtgctgagcgcaatgcagaaggtgcgctga
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