Rhodococcus opacus B4: ROP_68390
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Entry
ROP_68390 CDS
T00882
Name
(GenBank) putative ribonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rop
Rhodococcus opacus B4
Brite
KEGG Orthology (KO) [BR:
rop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rop03016
]
ROP_68390
Enzymes [BR:
rop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ROP_68390
Transfer RNA biogenesis [BR:
rop03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ROP_68390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAH55086
UniProt:
C1B497
LinkDB
All DBs
Position
complement(7461435..7462721)
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AA seq
428 aa
AA seq
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MSEVTDDASSPVPAEEPGRQVVPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAE
RASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPLEWILHSADQDLPGLA
EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGFELRKGHGAADWSKRPLPDTWLNYA
ALDVEVLVELRNAMAAELGEQGKSDWAAQEFEHIRLAGPPRPKPDRWRRTSHITSLKTQR
QLAAVRSLWQAREDLARKRDVSPSRVLPDSAIIDAATKDPRSIEALRALPVFGGPRQRRH
SRIWLQALEDARALPDSELPPKTPPFTGPPPASRWARHDPDAAERLTAARAALAALGAEV
SVPVENLVTPELVRRLCWDWSVPEDGAEAAIDRVLDAGGARPWQRMLTVPRLATALRAAA
EQKGAGDD
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagtcaccgacgacgcctcgtcacccgtccccgccgaagaacccggcaggcag
gtagtacccctgctcgcaccccgggacggcgtacccgacgtggtgaccaccgcggagggt
gtcgcgaaggccgcggccgcgctgagcgagggcaccgggccgctggcggtcgacgccgag
cgggcgtccggcttccgctactcggcgcgggcgtatctcgtgcagctgcgccgggagggg
gcggggacggtgctcctcgacccgattcccaccgccgccgatctcgccccactggcggag
gtgatcaacccgctggaatggatcctgcactccgccgaccaggatctgccggggctcgcg
gagatcggcctcgcgccggcgacgctgttcgacaccgaactcgcggggcgcctcgccggg
ttcgaacgggtcggcctcgccgcgatcgtcgagcggaccctcggcttcgaactgcgaaag
ggccacggcgccgccgactggtcgaagcggccgctgcccgacacgtggctgaactacgcg
gccctcgacgtcgaggtcctggtcgagttgcggaacgcgatggccgcggaactcggagag
cagggcaagagcgattgggcggcacaggaattcgagcacatccggctcgccgggccaccg
cggcccaagcccgaccgctggcggcggacgtcgcacatcacgtcactgaagacgcagcgg
cagctcgccgccgtgcgctcgctgtggcaggcccgtgaggacctggcccgcaaacgcgac
gtctcccccagccgggtgcttccggattcggcgatcatcgacgccgcgacgaaggacccc
cggagcatcgaggcgctgcgggcgctgccggtgttcggcggtccccggcagcggcggcat
tcccggatctggttgcaggcgctcgaggatgcgcgggcgctaccggactccgaactaccc
ccgaagaccccgccgttcaccggaccgccgccggcgagccggtgggcgcggcacgacccc
gacgctgccgaacgcctgaccgccgcccgcgccgcgctggccgccctcggggcggaggtg
tcggtgccggtggaaaacctggtaaccccggaactcgtccgcaggctgtgctgggactgg
tcggttcccgaggacggcgccgaggcggcgatcgaccgggtgctcgacgcgggcggggcg
cgaccgtggcagcggatgctgacggtgccccggctggcgaccgcgctgcgcgccgcggcc
gagcagaagggcgccggcgacgactga
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