Raoultella ornithinolytica B6: RORB6_02250
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Entry
RORB6_02250 CDS
T02625
Symbol
dacD
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror00550
Peptidoglycan biosynthesis
ror01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RORB6_02250 (dacD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ror01002
]
RORB6_02250 (dacD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ror01011
]
RORB6_02250 (dacD)
Enzymes [BR:
ror01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RORB6_02250 (dacD)
Peptidases and inhibitors [BR:
ror01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RORB6_02250 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ror01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RORB6_02250 (dacD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
AGJ85148
LinkDB
All DBs
Position
523221..524387
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AA seq
388 aa
AA seq
DB search
MKGRFFIAVTLLASSVSCAFAANDFPVTVPPPSIQAGSWVLMDYTTGQILTAGNEHQQRN
PASLTKLMTGYVVDRAIDSHRISFDDIVTVGRDAWAKGNPVFDGSSLMFLKAGDRVSVRD
LSRGLIVDSGNDACVALADYVAGGQPQFVAMMNEYVKKLHLQDTHFETVHGLDAPGQHSS
AYDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG
FNLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGKKVGSERIW
YGDKEQIQLGTDQDFWLALPKSEVPRIKAKYVLDKKDLEAPIAANQRVGEISLYDGDKVV
AHWPLVTLESVGKGGVFSRMSDYLHHAL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggccgtttttttattgctgtaactttgctcgcttcgagcgtttcttgcgcattt
gctgccaatgatttccccgtcaccgtgccgccaccgtccattcaggcgggctcctgggta
ctgatggattacacgaccgggcagatcctgactgcgggtaatgaacaccagcagcgcaac
cctgccagcctgaccaaactcatgaccggatacgtcgtcgatcgcgccatcgacagtcat
cgtatctcctttgacgatattgtgaccgtcggccgcgacgcctgggcgaaaggcaaccct
gtctttgacggctcgtcgttgatgttccttaaggccggcgatcgggtcagcgtccgggat
ttaagccgcggcctcatcgtcgactccggcaatgatgcctgcgtggcgctggctgattat
gtcgcaggcggccagccgcagttcgtggccatgatgaatgagtacgtaaaaaaactgcat
ctgcaggatacccactttgaaaccgtgcatggcctggatgcgccgggtcaacacagctcg
gcgtacgatcttgcggtgctgtcgcgggcgatcattcacggcgagcctgacgtttatcac
atgtacagccaaaaaagcctgacgtggaacgggatcacccagcagaaccggaacgggctg
ctgtgggataagaccatgaatgttgatggattaaagaccgggcatacctccggcgccggc
tttaacctgattgcctccgcggtggacggccagcggcgcctgattgccgtagtgatgggg
gccgatagcccgaaagggcgcgaacagcaggcggcaaaactgctgcactggggtcagcaa
aatttcgacaccgttcaggtgctgcaaaagggcaaaaaggtcggcagcgaacgtatctgg
tacggtgataaagaacaaatccagctgggtaccgatcaggatttctggctggcgctgccg
aagtcggaagtgccgcgtattaaagccaaatatgtgctggataaaaaagatcttgaggcg
ccaattgccgcaaatcaacgggtcggggaaatctcactctatgacggcgacaaagtggtc
gctcactggccgctggtgacgctggaaagcgtcggcaagggcggggtgttctcgcggatg
agcgattatctgcatcacgcgctgtaa
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