| Entry |
|
|---|
| Name |
(GenBank) ATP-dependent RNA helicase HrpA
|
|---|
| KO |
|
|---|
| Organism |
ror Raoultella ornithinolytica B6
|
|---|
| Brite |
KEGG Orthology (KO) [BR:ror00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ror03019]
RORB6_07465
Enzymes [BR:ror01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RORB6_07465
Messenger RNA biogenesis [BR:ror03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RORB6_07465
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
complement(1668013..1671858)
|
|---|
| AA seq |
1281 aa
MLRDKSRFSRRLHGVKKVKNPEAQQAILQEMAQEIEQAAGRVLLREASRPTITYPENLPV
SQKKDEILQAVRDHQVVIVAGETGSGKTTQLPKICMELGRGVKGLIGHTQPRRLAARTVA
NRIAEELQSEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEDADDTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLRHTE
VLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQQTAYKLTPMGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNQFRRQCRTDFLNYLRVREWQDIYTQLRQVVKELGLPINSEPAEY
REIHTALLTGLLSHIGMKDNDKQEFTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRL
WGRIAARIDPEWIEPVAQHLLKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRDNLRLRTEIEELEHKSRRRDILVDDDTLFDFY
DQRISHDVISARHFDKWWKAASRETPDLLNFEKSMLIKEGAEQVSKLDYPNFWHQGNLKL
RLTYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRRELIIALIKSLPKPLRRNFV
PAPNYAEAFLGRATPLELPLLDSLERELRRMSGVTIDREAWQWEQVPDHLKITFRVVDDK
NKKLAEGRSLQDLKEALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQQQAMWQGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLDLIDDCISCGVDKLIDEAGGPVWREEDFARLHDKVRAELNETVVEIAKQVEQI
LTAVFNINKRLKGRVDMSMALGLSDIKAQMGGLVYRGFVTGNGFRRLGDTLRYLQAIEKR
LEKMAIDPHRDRAQMLKVESIQQAWQQWLNKLPPGRRGDTDVQEIRWMIEELRVSFFAQQ
LGTPYPISDKRVLQAMEQIVA |
|---|
| NT seq |
3846 nt +upstreamnt +downstreamnt
atgctgcgtgataagtcacgcttttcccgtcgcctgcatggcgtgaagaaggttaaaaat
cctgaagcccagcaggccattcttcaggagatggcgcaagagatcgaacaagctgcaggg
agagtcctgctgcgtgaagcgtcgcgtccgacgattacttacccggaaaatctaccggtc
agccagaaaaaagatgagattttgcaggcggttcgcgaccatcaggtggtcattgtggcg
ggggagaccggctccggtaaaaccacccagctgccgaaaatctgcatggagctggggcgc
ggggtgaaagggctgattggccatacgcagccgcgtcgtctggcggcgcgcaccgtggcc
aaccgtattgccgaagagctgcaaagcgagccgggcggctgcatcggctataaggtccgt
tttagcgaccacgttagcgacaacaccatggtcaagctgatgaccgacggtattctgctg
gcggaaatccagcaggatcgactgttgatgcagtatgacaccatcatcatcgatgaagcg
cacgaacgtagcctcaacatcgacttcctgctcggctatttacgggaactgctgccgcgt
cgcccggacctgaaaattatcattacttcggcaaccatcgacccggaacgattttcgcgc
cactttaacaacgcgccgattatcgaagtatccgggcgaacttacccggtggaggtgcgc
tatcggccaatcgttgaagatgccgacgacaccgaacgcgatcagctgcaggcgatcttc
gatgccgttgatgaactgggacgtgaaagtcccggcgatatcctgatctttatgagcggc
gagcgcgaaattcgcgataccgccgatgcgctcaataagctcaatctgcgccataccgaa
gtgctaccgctctatgcgcgcttatcgaacagcgagcagaaccgcgtcttccagtcgcac
agcgggcggcggattgtgctggcgaccaacgtcgccgaaacctcgctgacggtgccgggc
attaagtatgttatcgatccgggcaccgcgcgcatcagccgctacagctaccggaccaag
gtgcagcgtctgccgattgagccggtctctcaggcctctgctaaccagcgtaaagggcgc
tgcggccgtgtttccgaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggaatttaccgacccggaaattctgcgtactaacctggcgtcggtgattctgcaa
atgaccgcgctgggcctcggagatattgccgccttcccgttcgtcgaagcgccggataag
cgcaatatccaggacggcgtgcgtctgcttgaggagctgggggcgattaccaccgacgag
cagcagaccgcctataagctgacgccgatgggtcgtcagctcagccagctgccggttgac
ccgcgcctggcgcggatggtgctggaagcgcaaaaacatggctgcgtgcgtgaagcgatg
atcatcacctcggcgctgtcgattcaggacccgcgcgaacgcccgatggacaagcagcag
gcctccgatgagaaacatcgccgcttccacgataaagagtccgacttcctggcgtttgtt
aacctgtggaactaccttggcgagcagcaaaaagcgctctcctcgaaccagttccgtcgc
cagtgccgtaccgattttctcaactatctgcgggtgcgcgaatggcaggatatctacacc
cagctgcgccaggtggtgaaagagctggggctgccgattaacagcgagccggcggagtat
cgcgaaatccataccgcgctgctgaccggtctgctgtcgcacatcgggatgaaagataac
gataagcaggaatttaccggcgcgcgtaatgcgcgtttctctatcttcccgggctccggt
ctgttcaagaaaccgccgaagtggacgatggttgccgaactggtggaaaccagccgtctg
tggggacggattgccgcgcgcatcgacccggaatggatagagccggtggcgcagcacctg
ctgaaacgctcatacagcgaaccgcactgggagcgggcgcagggggcggtgatggcgacg
gagaaagtgaccgtttacggtctgccgatcgtcgccgcccgcaaagtgaactatagccag
atcgacccggcgttgtgccgcgagctgtttatccgccacgcgctggtggagggggactgg
cagacgcgtcacgccttcttccgcgacaacctcaggctgcgcacggaaatcgaagagctg
gagcataaatcgcgccgccgcgacattctggtggatgacgatacgctgttcgatttctac
gaccagcgtatcagccacgatgtgatctccgcgcgccacttcgataagtggtggaaagcg
gccagtcgcgaaacgccggatctgctcaacttcgaaaagagtatgttgatcaaagagggg
gcggaacaggtcagtaagcttgactatccgaacttctggcatcagggcaacctcaagctg
cggttgacctatcagtttgaaccgggcgccgatgccgacggggtgacggtacatattccg
ctgccgttgctcaaccaggtggaagaggccgggttcgagtggcagattcccggcctgcgc
cgcgaattgattatcgcgctgattaaatcgctgccgaaaccgctgcgtcgtaatttcgtg
ccggcgccgaactacgccgaggcgtttttaggccgcgcgacgccgctggagctgccgctg
ctcgattcgctggagcgcgagttgcggcggatgagcggcgtgaccatcgaccgcgaggcc
tggcagtgggaacaggtgcccgatcatctgaaaatcaccttccgggtggtggatgacaag
aacaaaaagctggcggaagggcgttcgctgcaggatttaaaagaggctttgaagggcaaa
gtgcaggagacgctttctgccgttgccgacgatggcattgagcagagcgggctgcatatc
tggagtttcggtcagctgccggagagctacgagcaaaaacgcggcaactataaggtgaaa
gcctggccggcgctggtggatgaacgcgacagcgtggcgattaagctgtttgataatccg
ctggagcagcagcaggcgatgtggcaggggctgcgccgtctgctgctgctgaatatcccg
tcgccgattaagtatctgcacgagaagctgccgaataaagccaagctggggctctatttt
aacccttacggcaaagtgctggatctgattgatgactgtatctcctgtggcgtcgataaa
cttatcgatgaggcgggcggcccggtgtggcgcgaggaggatttcgccagactgcacgat
aaggtgcgcgccgaactgaatgagacggtggtggagatagccaaacaggttgaacagatt
ctgaccgcggtgtttaacatcaataagcggctgaaagggcgcgtcgacatgagcatggcg
ctggggctgtcggatattaaggcgcagatgggcgggttggtctatcgcggcttcgtgacc
ggcaacggtttccgccggctgggggatactctgcgctatctgcaggcgattgaaaaacgg
ctggagaaaatggccatcgatccgcatcgcgaccgggcgcagatgcttaaggtggagagt
atccagcaggcctggcagcagtggctgaataagctgccgccggggcgtcgtggggatacg
gatgtgcaggagattcgctggatgattgaggagctacgcgtcagcttcttcgcccagcag
ctcggaacgccgtatcccatctccgacaagcgggtgctgcaggcgatggagcagatcgtc
gcctga |
|---|
