Raoultella ornithinolytica B6: RORB6_08235
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Entry
RORB6_08235 CDS
T02625
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ror
Raoultella ornithinolytica B6
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ror03016
]
RORB6_08235
Enzymes [BR:
ror01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RORB6_08235
Transfer RNA biogenesis [BR:
ror03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RORB6_08235
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
AGJ86336
LinkDB
All DBs
Position
1826864..1828798
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
SAVIHTEKERESAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRADRSVSH
DFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFSDDHFVPWWVTLARHNLEKEAPDGVAT
ELLDEGLERRDLTALDFVTIDSASTEDMDDALYVEAAADGKLHLTVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMILTADGTIEDDIEF
FAATIESKAKLAYDNVSDWLENTGSWQPESESIAQQIKLLQDVCLRRSEWRKTHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGVYNVHTGFD
PANTEQLATLLKTHDVHVDPVEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAIIKGETATRPQDEIAVQMAERRRLNRM
AERDVGDWLYARYLSPQAGTDTRYAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVKIAEVRMETRSVIARPFA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagactcct
cgtgttgaaggggtcgtgaaggggacggaaaaaggttttggcttcctcgaagttgatgcg
cagaaaagctactttattccgccgccgcaaatgaaaaaagtgatgcatggcgaccgtatc
agcgccgtgatccacactgaaaaagaacgtgaaagcgccgagccggaagagttgattgaa
cctttcctgacccgtttcgtcggtaaagtgcataagaaagatgaccgactgtccatcgtt
cccgatcatccgctgctgaaagacgctattccctgccgcgccgaccgtagcgtgagccat
gattttaaagagggtgactgggccgttgctgaaatgcgccgtcatccgctgaaaggcgac
cgcggtttttatgccgaattaacccagtttattaccttcagcgacgatcatttcgttccg
tggtgggtcacgctggctcgccacaatctggaaaaagaagccccggacggcgtggcgacc
gaattgctggatgaaggtctggaacgtcgtgacttaacggcgctggacttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtatgtcgaagccgccgccgacggc
aagctgcatttgaccgtcgctatcgccgatccgaccgcctggattgccgaaggcagcaaa
ctggacaaagcggcaaaaattcgcgccttcaccaactatctgccgggctttaacatcccg
atgttgccgcgcgagctgtctgacgacctgtgctctctgcgcgccaacgaagtgcgtccg
gtcctcgcctgccgcatgatcctgacggctgacggcacgattgaagacgatatcgaattc
ttcgccgcgactattgagtcaaaagccaagctggcctacgacaacgtctccgactggctg
gaaaataccggcagctggcagcctgagagcgagtctatcgctcaacagatcaaactgctg
caggatgtctgcctgcgccgcagcgaatggcgtaaaacccatgcgctggtattcaaggac
cgtcctgactaccgtttcgtgctgggtgagaaaggcgaggtgctggatatcgttgccgaa
ccgcgccgcatcgctaaccgcattgtcgaagaatcaatgattgcggcaaacatctgcgcg
gcccgcgttctgcgcgacaagctgggctttggtgtttataacgtgcataccggctttgat
ccggccaacaccgaacagctggcaacgttgctgaagactcacgacgtccacgttgatccg
gttgaagtgctgaccctcgagggtttctgcaaactgcgtcgcgagcttgatgcccagccg
tcgggtttcctcgacagccgcattcgtcgcttccagtcctacgcggaaatcagcaccgaa
ccgggtccgcactttgggcttggccttgaagcctatgccacctggacctcaccgattcgt
aaatatggcgacatgattaaccatcgcctgctgaaagcgatcatcaaaggtgaaacggca
acgcgtccgcaagatgagattgccgtacagatggccgagcgccgtcgcctgaaccgcatg
gccgaacgcgatgttggtgactggctgtacgcccgttatctgagcccgcaggccggtacc
gatacgcgctatgccgcggaaattatcgatatcagccgcggcgggatgcgcgttcgcctg
gtggataacggcgccgtcgcctttatcccggcaccgttcctgcacgccgttcgtgatgag
ctggtctgtagccaggaaaacggtaccgtgcagatcaaaggcgaaaccgtctacaaagtg
actgacgttatcgacgtcaagattgccgaagtccgtatggaaacccgcagcgtcatcgcg
cgtccgttcgcctga
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