Raoultella ornithinolytica B6: RORB6_09095
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Entry
RORB6_09095 CDS
T02625
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RORB6_09095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_09095
Enzymes [BR:
ror01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RORB6_09095
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RORB6_09095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGJ86508
LinkDB
All DBs
Position
2008999..2012445
Genome browser
AA seq
1148 aa
AA seq
DB search
MPQQYRYTLPVKPGEQRHLGELTGAACATLVAEMAERHGGPVILVAPDMQNALRLNDEVR
QFTDSMVTGLADWETLPYDSFSPHQDIISSRLATLYQLPTMQRGVLIVPVSTLMQRVCPH
NFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEFPTDQAAIELFRSQWRDRFEVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFSEPLPPLFSYFPANALIVNTGDLEASAGRFQNETL
ARFESRGVDPMRPLLPPEQLWLRIDELFSELKKWPRIQLKTERLAEKAANINLGYQTLPD
LSVQAQNKAPLDNLRRFLETFNGPVIFSVESEGRREALGEVLARIKIAPKHILRLEEATG
NGRYLMIGAAEHGFIDSPRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFCDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSEVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASARNEHDLEEIKVELIDRFGPLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFNEKNNVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLGERKTRMEWVRQFMR
QLEENATA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaacaataccgatacacactgccggtcaagcccggcgaacagcggcacctcggt
gaattaaccggcgcggcttgtgccacgttggttgcggaaatggccgagcgccacggtggg
ccggttatactcgtcgcccccgatatgcaaaatgccctgcgcctgaacgatgaagttcgc
cagtttaccgacagcatggtgacgggcctggcagactgggaaacgctaccttacgatagc
ttctcgccgcatcaggacattatctcttcccgcctcgccactctctatcaattacccacc
atgcagcgcggcgtgctgatcgtgccggtcagcacactcatgcagcgcgtctgtccgcat
aatttcctccacggacacgcgctggtgatgaaaaaaggccagcgtctgtcgcgtgacgcc
ctgcgcactcagctggacagcgccggctatcgccatgtggatcaggtaatggaacacggg
gagtacgccacccgcggcgccctgcttgacctgttcccgatgggtagcgagcaaccctac
cgcctcgacttcttcgatgatgaaatcgacagcctgcgcctgttcgacgtcgacagccag
cgtacgctggaagaggtggccgccattaatctgctgcccgcacatgagttcccgaccgat
caggcggcgattgagctgttccgtagccagtggcgcgaccgttttgaggtcaagcgggac
gccgaacatatctatcagcaggtcagcaaagggaccttaccgaccgggattgaatactgg
cagccgctgtttttcagtgagccgctgccgccgctgttcagctacttcccggcaaacgcc
ctgatcgtcaataccggcgatctggaagccagcgccgggcgttttcagaacgaaaccctc
gcccgtttcgaaagccgcggcgtcgacccgatgcgtccgctgctgccgccggaacagctc
tggctgcggatcgacgaactgttcagcgagctgaaaaaatggccgcgtattcagttaaaa
acggagcgtctggccgagaaagccgccaatattaacctcggctatcaaacgctgccggac
ctctcggtgcaggcacagaacaaagcgccgctggacaatctgcgtcgtttcctcgaaacc
tttaacggcccggttattttctcggttgagagcgaaggtcgccgggaggcgctgggcgaa
gtgctggcgcgcatcaaaattgcgccgaaacatattctgcggctggaagaagccaccggc
aacggccgctatttaatgattggcgccgccgaacacgggtttatcgatagcccgcgtaat
ctggcactgatttgcgaaagcgacctgctgggcgagcgcgtggcgcgtcgtcgccaggat
tcacgccgcaccattaaccccgacaccttaatccgtaacctggcggaactgcatatcggc
cagccggtggtgcacctggagcatggcgttggtcgttatgccggtatgaccacgctggaa
gctggcggcatcaaaggggaatacctgatgctgacctacgccaacgatgccaaactgtat
gtgccggtgtcatcattgcatctgattagccgctacgccggcggggcagaagagagcgcc
ccgctgcataaactcggtggcgatgcctgggcgcgcgcgcggcagaaagcggcggaaaaa
gtgcgcgacgtggcggcggaactgctcgatatttacgcccagcgcgcggcgaaatcgggc
tttgcctttaagcacgatcgcgaacagtaccagctattctgcgacggtttcccgtttgag
accacgccggatcaggcgcaggcaattaacgccgttctcagcgacatgtgtcaaccgctg
gccatggaccgcctggtctgtggcgacgtcggcttcggtaaaaccgaagtagcgatgcgt
gccgcgttcctggcagtggagaaccacaagcaggtcgcggtcctggtgccaaccaccctg
ctcgcgcagcagcacttcgataatttctgcgaccgctttgccaactggccggtacgcatt
gaaatgctgtcacgctttcgcagcgcgaaagagcaggcgcagattcttgaacaggccgcc
gagggtaaaatcgatattcttatcggcacgcataagctgctgcaaagcgaagtcaaactg
cgcgaccttgggctgctgatcgtcgatgaagagcatcgcttcggggttcgccacaaagag
cgaatcaaggcgatgcgtgccgacgtcgatattctgacgctgaccgccacgccgatccca
cgaacgctgaacatggcgatgagcggaatgcgggatctgtccattattgccacgccgccc
gcccgccgtctggcggtgaaaaccttcgtccgggagtatgactcgctggtggttcgcgag
gcgattctgcgtgaagtgctgcgcggcggccaggtctactacctctataacgacgtggag
aatatccagaaagcggcggatcgactcgcggagctggtgccggaggcacgtattgccatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtgatgaatgatttccaccaccag
cgctttaacgtgctggtctgtaccaccatcattgagaccgggatcgatatcccgaccgcc
aataccattatcatcgagcgcgcggaccatttcggtctggctcagctgcaccagctgcgc
ggacgcgttggccgctcgcatcatcaggcctatgcctggctgctgacgccgcacccgaaa
gcgatgaccaccgatgcgcaaaagcgtctggaagccatcgcctcgctggaggatctcggc
gccggtttcgcgctggctacgcatgacctggaaatccgcggtgccggcgagctgctgggc
gaagatcagagcgggcagatgaccaccatcggtttttcgctctatatggagcttctggag
aatgctgtcgatgcgctgaaagccggacgcgaaccttcgcttgaggatctgaccagccag
cagactgaagttgagctgcgtatgccttcactgttgccggacgactttattcctgatgtg
aatacccgactctcgttctataagcggattgccagcgccaggaatgagcacgacctggaa
gagattaaagtcgaactgattgaccgcttcggcccgctgccggatgcggcgagaaacctg
ctggatatcgcccgcctgcgtcaacaggcgcagaagctgggtatccggaagctggagggc
aatgagaaaggcggcgtgattgagttcaatgaaaagaacaacgtcaacccggtatggctg
attggcctgctgcaaaaacagccacagcacttccgcctggatggtccgacgcgactgaag
ttcatgcaggatcttggcgagcgtaaaacgcggatggagtgggttcgccagtttatgcgt
cagttagaagagaacgcgaccgcataa
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