Klebsiella ornithinolytica B6: RORB6_09245
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Entry
RORB6_09245 CDS
T02625
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ror
Klebsiella ornithinolytica B6
Pathway
ror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RORB6_09245 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ror03019
]
RORB6_09245 (rne)
03009 Ribosome biogenesis [BR:
ror03009
]
RORB6_09245 (rne)
Enzymes [BR:
ror01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RORB6_09245 (rne)
Messenger RNA biogenesis [BR:
ror03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RORB6_09245 (rne)
Ribosome biogenesis [BR:
ror03009
]
Prokaryotic type
rRNA processing factors
RORB6_09245 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AGJ86538
LinkDB
All DBs
Position
2041879..2045139
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRAAVSAIETRQGDVRVIIVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPADEEPAERKRPEQPALATFVMPDVPPA
PEQEVPVAAPAAAKPAVAAAAPAQPGLLSRFFGALKNIFSGAEEAKPAEPQVEKKAEEKP
ERQQERRKPRTNNRRDRNDRRDNRDNRDGRDNRDNRAENSEGREPRESREENRRNRREKQ
QQNVEPRESRQTVTEDAEKGKARDEQQPRRERNRRRNDEKRQAPQEAKPQTREEPVVQQE
AEQEERVQTMSRRKPRQLSQKVRIESAVAETAAQVVETAAAVQPEAVAPRTELAKVDLPA
VVESNGDHDDNNESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVARPQDQQQEEQQVQASVTETVAPVAVAEAAIAEVVAPAVAEAAPVA
AEQPVVAEATVAEAAQTVQPEVARETEVAPQDIIAAEAPVVEAESIVAPVVAEPETVAVD
TAAEGVVEEPAPVVAAEAPAPQVIEPAPVVEATPVVETAPVVEAAPVVESAPAPVVVATP
AAAVVVSHRHATAPMTRAPAPAYEPEAPRHSDWVRPSFAFDGKGAAGGHSATHQATAEPT
RPQPAE
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgaacctagccttgaagccgcgtttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccctgcc
aactacaattctcacggtcgtccgaatattaaggatgttctgcgtgaaggtcaggaagta
attgttcagattgataaagaagaacgtggcaacaaaggtgccgcgctcaccacctttatc
agtctggcgggtagctatctggtactgatgccgaacaacccgcgcgcgggcggcatttca
cgccgtatcgagggtgacgaccgtaccgaactgaaagaagcgctggccagccttgagctg
ccggacggcatggggcttatcgtgcgtaccgcgggcgtcggcaaatctgccgaagcgctg
cagtgggacctgagcttccgtctgaaacactgggaagccatccagaaagccgctgatagc
cgcccggcgccgttcctgattcatcaggaaagcaacgtcatcgtgcgcgccttccgtgat
tacctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggct
cgccagcacatcgctgcactgggtcgcccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccattaccaaatcgaatcgcagattgaatccgccttccag
cgcgaagtgcgcctgccttccggcgggtcaatcgttatcgacagcaccgaagcgttaacc
gctatcgatatcaactccgctcgcgccacccgcggcggtgacatcgaagaaacggcattc
aacacgaacctggaagcggccgatgagattgcccgccagctgcgtctgcgtgacctcggc
ggcctgattgtcatcgacttcatcgacatgacgccggtacgccaccagcgcgcggttgaa
aaccgcctgcgcgaagcggtacgtcaggatcgtgcccgtatccagatcagccatatttct
cgcttcggcctgctcgaaatgtcgcgtcagcgtctgagcccgtcgctgggtgaatccagt
catcacgtctgcccgcgctgtagcggtaccggcaccgttcgtgataacgagtccctgtcg
ctctcgatcctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaagttcac
gctatcgtgcctgtgccgattgcgtcctacctgctgaacgaaaaacgcgctgcggtgagc
gccatcgaaacccgtcagggcgacgttcgcgtgatcatcgtcccgaacgatcagatggaa
accccgcactactccgtgctgcgcgtacgcaaaggcgaagagacctctaccctgagctat
ctgctgcctaaactgcatgaagaagagatggcgctgcctgcggacgaagaaccggccgag
cgtaaacgccctgagcaaccggctctggccaccttcgtgatgccggacgtaccgcctgca
cccgagcaggaagttcctgttgccgcacctgccgccgcaaaaccagcggttgccgctgcc
gcgccggcgcagcctggtctgctctcgcgcttctttggtgccctgaaaaacatcttctcc
ggtgcagaagaagctaaaccggcagaacctcaggtagagaagaaagccgaagagaaaccg
gaacgtcagcaagaacgtcgcaaaccgcggaccaacaatcgccgcgaccgcaacgatcgt
cgtgataaccgtgataaccgcgacggtcgtgataaccgcgataaccgcgctgaaaatagc
gaaggccgtgaacctcgtgaatcccgcgaggaaaaccgccgtaatcgtcgcgagaaacag
cagcagaatgtcgagccgcgtgaatctcgccagacggtgaccgaggatgctgaaaaaggc
aaagcgcgcgatgagcagcagccgcgtcgtgagcgtaatcgtcgtcgtaacgatgagaag
cgccaggcgccgcaggaagctaagccacaaacgcgcgaagagccggtagtccagcaggaa
gccgagcaggaagaacgcgttcagacgatgtctcgtcgtaaaccgcgtcagttatcccag
aaggttcgcatcgagtctgcggtcgcagaaacggccgctcaggttgttgaaaccgcggct
gcggtccagccggaagctgtcgctccgcgcacggaactggcgaaagtcgatctgcctgcc
gtcgttgaaagtaacggcgaccatgacgacaacaacgagtctcgcgaagccaacggtatg
ccgcgtcgctctcgtcgctcgccgcgtcatctgcgcgtcagcggtcagcgccgtcgtcgt
taccgcgatgagcgttacccgacccagtcgccgatgccgctgaccgtagcctgtgcatct
ccggaaatggcgtcaggtaaagtgtggattcgttacccggttgcccgtccgcaggatcaa
cagcaggaagaacagcaggttcaggcctccgtgactgaaactgtcgctcctgttgctgtc
gctgaagctgccattgcagaagtggtcgccccggcggttgccgaagcagcgcctgttgcc
gccgaacaacctgtcgtagccgaagcgaccgtcgctgaagccgcgcagactgttcagccg
gaggtcgcccgcgaaaccgaggttgctccgcaggatattatcgccgcagaagcgccggta
gttgaggcagaaagcattgttgcgccggttgttgccgagccggaaacagtagcggtagac
acggctgcagaaggcgttgttgaggaacctgccccggttgtggcagcagaagctccggca
ccgcaggtcattgaaccggcgccggtggttgaagctactccggtggttgaaactgctccg
gtggttgaagccgcgccggtcgtcgaatcagcgcctgctccggtcgtggtcgctacacca
gcggcagcggttgtcgtgtctcatcgccacgccaccgccccgatgacgcgtgctccggcg
ccggcctacgagccagaagcgccgcgtcacagcgactgggttcgcccgtcgtttgccttt
gacggcaaaggcgcagcaggcggccacagcgcaactcaccaggcgacggcggaacctacc
cgtccacaacctgccgagtaa
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