Raoultella ornithinolytica B6: RORB6_14190
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Entry
RORB6_14190 CDS
T02625
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03030
DNA replication
ror03430
Mismatch repair
ror03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RORB6_14190 (dnaE)
03430 Mismatch repair
RORB6_14190 (dnaE)
03440 Homologous recombination
RORB6_14190 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ror03032
]
RORB6_14190 (dnaE)
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_14190 (dnaE)
Enzymes [BR:
ror01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RORB6_14190 (dnaE)
DNA replication proteins [BR:
ror03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RORB6_14190 (dnaE)
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RORB6_14190 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGJ87519
LinkDB
All DBs
Position
complement(3104298..3107780)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGA
GLKPIVGADFHVQSELMGDEFTELTVLAANNVGYQNLTLLISRAYQRGYGALGPWIDRDW
LAEHQEGLILLSGARKGDVGVSLTRGNMALVDQCLSFYQQHFPDRYYLELIRTGRADEEA
YLHAAVQLAEERGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRKYSPQQYM
RSEDEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLAFLFPDPEERLKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKHGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtccacctgcgggtgcatagcgactattccatgatcgatggg
ctggcaaaaaccgggccgctggtgaaaaaggcggcctcgcttggcatgcctgcgctggcg
atcaccgattttactaacctgtgcggactggtgaagttctacggagcgggacatggcgcg
ggcctgaagcctatcgtcggcgcggattttcacgtccagagcgaactgatgggcgatgag
ttcaccgaactcacggttctggcggccaacaatgtgggttatcaaaacctgacgctgctg
atttcacgtgcctatcaacgcggctatggcgcgctggggccgtggattgaccgggactgg
ctggccgaacatcaggaagggctgatcctgctttccggcgcgcgtaaaggcgatgttggc
gtcagcctgacgcgtggcaatatggcgctggtcgatcaatgtctctctttctaccagcag
catttcccggatcgctactatctggagctgatccgcaccggccgcgctgatgaagaggcc
tatttacacgccgccgtgcagctggctgaagaacgcggtttaccggtcgtggcgaccaac
gatgtgcgtttcctggaaaccggtgatttcgatgcgcatgagatccgcgtcgcgatccat
gacggctttaccctggacgatccgaagcgcccgcgcaaatactcgccgcagcaatatatg
cgcagcgaagatgaaatgtgcgagctgttctccgatattccggaggcgctggaaaatacc
gtcgaaatcgccaagcgctgcaacgttaccgtgcgtcttggcgaatacttcctgccgcag
ttcccgaccggggatatgacgacggaagattatctggttaaaaaatcaaaagagggcctg
gaagagcgtctggctttcctgttccctgatcctgaagagcggcttaaacgccgacctgaa
tacgatgaacgactggatatcgaacttcaggtaattaaccagatgggcttccccggctac
ttcctgatcgtcatggagtttatccagtggtccaaggataacggcgtaccggtagggccg
ggacgtggttccggcgccgggtcgttagtcgcctacgccttaaaaatcaccgatctggat
ccgctggaattcgatctgctgtttgaacgtttcctgaaccctgaacgtgtatcgatgccc
gactttgacgtcgatttctgcatggagaagcgcgatcaggttatcgagcacgtggcggag
atgtacggtcgcgacgcggtatcgcagatcatcaccttcggtacgatggcagcgaaagcg
gttattcgtgatgtgggccgcgtgctcggccacccgtacgggttcgtggatcggatctca
aaactggtgccgcccgacccgggtatgacgctggcgaaagcgtttgaggccgagccgcag
ctgccggagatctacgaagctgacgaagaggtcagagcgctgatcgacatggcgcgtaag
ttggaaggcgtcacgcgtaacgccggtaagcatgcggggggcgtggttatcgccccgacc
aaaattaccgacttcgccccgctatattgcgatgaagccggtctccatccggtcacccag
tttgataagaacgacgtcgaatacgccgggctggtgaagttcgacttccttggcctgcgt
acgctgaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaaacacggc
gagccgccgctggatatcgcggcgatcccgctggacgataagaaaagcttcgatatgctg
caacgctcggaaaccaccgcggttttccagcttgaatcgcgcggcatgaaagatctgatt
aaacgcctgcagcccgactgcttcgaagatatgatcgcgctggtggccctgttccgtccg
gggccgctgcaatcggggatggtagataactttatcgaccgtaaacacggccgcgaagag
atctcttacccggacgtgcagtggcagcatgagtgtctgaaaccggtgcttgagccgacg
tatggcattatcctgtatcaggaacaggtcatgcagattgcccaggagctctcaggctat
accctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgcggtacctttgaagaaggggccaggaaaaacggcattgacggcgagctg
gcgatcaaaatctttgacctggtggagaaattcgccggctacggatttaacaaatcgcac
tcggcagcctatgcactggtctcctaccagacgctgtggctgaaagcgcactatccggcc
gagtttatggcggcggtgatgaccgcggatatggataacaccgaaaaagtggtggggctg
gtcgacgagtgctggcggatgggcctgaaaatcctgccgccggatattaactccggtctg
taccatttccacgtgaatgacgacggtgaaatcgtctatggtatcggcgcgattaaaggg
gtcggcgaaggcccgatcgaagccattattgaagcgcgtaacaacggtggttatttccgc
gagttgttcgatctttgcgcccgcaccgataccaaaaagctgaaccgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgtctcgggccgcatcgcgcggcattaatgaat
tcgctgggcgatgcgctgaaggccgccgatcagcatgcgaaagccgaagcgattggccag
gcggatatgttcggggtgctggcggaagagccggagcaaattgagcaatcctatgccaac
tgccagccgtggccggagcaggtggtgctggatggtgaaagggagaccctggggctgtac
ctgacgggccatcctatcaaccagtatttgaaagagattgagcgctatgttggcggcgtg
agactcaaagacatgcatccgaccgatcgtggtaaagtcaccacggcggcggggctcgtt
attgctgcgcgggtaatggtcaccaagcgcggcaatcgtatcggtatctgtacgttggat
gaccgttccgggcgtctggaggtgatgttatttaccgacgcgctggataaatatcagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgtgaagtcatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaaccattccagtacacctctattatcag
agggcggatgcgcgcgcgcggctgcgttttggcgcaacatggcgcgtctctccgagcgat
cgtttactcaacgatctgcgtggccttatcggctcggagcaggtggaactggagtttgac
taa
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