Raoultella ornithinolytica B6: RORB6_16685
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Entry
RORB6_16685 CDS
T02625
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RORB6_16685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ror03019
]
RORB6_16685
03016 Transfer RNA biogenesis [BR:
ror03016
]
RORB6_16685
Enzymes [BR:
ror01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RORB6_16685
Messenger RNA biogenesis [BR:
ror03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RORB6_16685
Transfer RNA biogenesis [BR:
ror03016
]
Prokaryotic type
tRNA degradation factors
RORB6_16685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AGJ88018
LinkDB
All DBs
Position
complement(3665117..3667573)
Genome browser
AA seq
818 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILDHLAKREKPASRDELATELNIEGEEQLEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRILVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYTWPPA
VEKQVSVLKEQVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHALYKVLDSA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKALEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLISIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATREVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERGPRNVGKTAREKTKKANGASNNAGKPSGRRRQAGKQVNFEPDSAFRGDKGK
PKPAKAKKEKGAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaagtatgcgaatccaatcccaagc
cgggaatttatcctcgatcatttagcaaaacgtgaaaaaccagccagtcgcgacgagctg
gcgacagaactgaatatcgaaggagaagaacaactcgaggggctgcgacgccgcctgcgc
gccatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcattgccggag
cgtctcgacctgctcaaaggcaccgttatcggccaccgcgacggctatggcttcctgcgc
gtcgaagggcgtaaagatgacctttatctctcttccgagcagatgaaaatgtgcatccat
ggcgatcagatcctcgcgcagccgctgggcgcggaccgtaaaggccgccgcgaagcgcgc
gtcgtgcgcattctggtgcctaaaaccagccagattgtcggccgctatttcaccgatgcc
ggcgtgggctttgtcgtaccggacgacagccgtctgagctttgacatcctgatcccaccg
gaagaggtgatgggcgcgcgaatgggcttcgtagtggtcgtggagctgacccaacgcccg
acccgacgcactaaagcgatcggtaaaatcgtcgaagtgctgggtgacaatatgggcacc
ggcatggcggttgacatggcgctgcgcacccatgaaatcccttacacctggccgccggcg
gtagagaaacaggtttcggtgctgaaagagcaggtgccggaagaggcgaaagcgggccgc
gtggatttgcgcgacctgccgctggtgactatcgatggtgaagatgcccgcgactttgat
gacgccgtttactgcgagaaaaaacgcggcggcggctggcgtctgtgggtggcgattgcc
gacgtcagctactatgtccgtcctggtacgccgctggacgctgaagcacgcagccgcggt
acttcggtctacttcccgtctcaggtcgtaccgatgctgccggaagtcctctccaacggc
ttatgttccctgaacccgcaggtcgatcgcctgtgcatggtctgcgagatgaccatttcg
tccaagggacgtctgaccggctacaagttctatgaagcggtgatgagctcacacgcgcgt
ctgacctacaccaaagtgtggcatatgctgcagggtgaccaggagctgcgtgagcactat
gcgccgctggtgaagcatattgaagagctgcatgcgctttataaagtgctggatagcgcc
cgtgaagaacgcggcgggatctcctttgagagcgaagaagcgaagtttatctttaacgct
gaacgtcgtattgagcgcattgagcagacgcagcgtaacgatgcgcacaaactgatcgaa
gagtgcatgattctggcgaacatctccgccgcacgcttcgttgagaaggcgctggagccg
gcgctgttccgtatccacgataagccgagcaccgaagcgattaccgcattccgttccgta
ctggcggagctggggctggagctgcctggcggcaataaaccagagccgcgtgattacgct
gagctgctgatctcgattgccgatcgtccggatcatgaaatgctgcaaacgatgctgctg
cgttcgatgaagcaggcgatatacgacccggaaaaccgcggccactttggtctggcgctg
caatcttacgcgcacttcacttcgccgattcgtcgttacccggacctgtcgctgcaccgt
gcgattaagtacctgctggcgaaagagcagggccataaaggcaacagtaccgaaaccggc
ggctggcactacagcatggatgaaatgctgcagctgggggcacactgttcgatgaccgaa
cgtcgtgccgacgaagctacccgcgaagtctccgactggctgaagtgtgactttatgctg
gatcaggtgggtaacgtctttaaaggtgtgattgccagcgtgaccggctttggtttcttc
gtgcgtctcgatgaactgtttatcgatggtctggtgcacgtctcctcgctggataacgac
tactatcgtttcgaccaggtcgggcaacgtctgatcggtgagtcgggcggccagacttat
cgtctgggcgatcgcgtggaagtccgcgtggaagcggtcaacatggacgaacgtaaaatc
gacttctcgctgatctccagcgagcgtggaccgcgtaacgtcggcaagaccgcccgggag
aagacgaagaaggctaacggcgccagcaataatgccggcaaaccgtccggccgtcgccgt
caggccggcaaacaggtgaacttcgagccagacagcgcgttccgtggtgataagggcaaa
ccgaaaccagcgaaagcgaagaaagagaagggcgcgaaaaaaccgtcggccaagacgcaa
aaaatagcggcggcgacgaaggcgaagcgcgcggcgaagaaaaaagtcgctgagtaa
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