Raoultella ornithinolytica B6: RORB6_17825
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Entry
RORB6_17825 CDS
T02625
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03420
Nucleotide excision repair
ror03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RORB6_17825 (uvrD)
03430 Mismatch repair
RORB6_17825 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_17825 (uvrD)
Enzymes [BR:
ror01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RORB6_17825 (uvrD)
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RORB6_17825 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RORB6_17825 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGJ88245
LinkDB
All DBs
Position
complement(3927763..3929925)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTTQGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDS
GKVMIVGDDDQSIYGWRGAQVENIQRFLTDFPGAQTIRLEQNYRSTSNILSAANALIENN
SGRLGKKLWTDGADGEPISLYCAFNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLKDKVLAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVINDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRATVSRPVSHQRMG
TPMAENDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagcctcaatgataaacagcgtgaagccgtagccgct
tcacgcaccaatatgctggttctggcgggagcgggcagcggtaagacgcgggttctggta
caccgtattgcctggctgctgagcgtggaaaactgctcaccgtattcgattatggcggtg
acctttaccaacaaagcggcagcggagatgcgtcatcgtattggccagctgatggggaca
acccagggcggcatgtgggtcgggacattccacgggctggcgcatcgcctgctgcgggcc
caccatctggacgctaacctgccgcaagattttcagatcctcgatagcgaagaccagctg
cgtctgctgaagcgtctgattaaggcgatgaacctcgacgagaagcagtggccgccgcgt
caggcgatgtggtacatcaatagccagaaagatgaagggctgcgcccgcatcatattcag
agctacggcaacccggtggaacagacctggcagaaagtttatcaggcctatcaggaagcc
tgcgatcgcgccggtctggtggactttgctgaactgctgctgcgcgcgcacgagctgtgg
ctcaataaaccgcatattctccagcactaccgcgaacgcttcaccaacatcctcgtggat
gagtttcaggataccaacaacatccagtatgcctggattcgcctgctggcgggcgatagc
ggcaaggtgatgattgtgggggatgatgaccagtcgatctacggctggcgcggcgcccag
gtggagaatattcagcgctttctcaccgatttccccggcgcgcagaccatccgcctggag
cagaactaccgctcgaccagcaacatcctgagcgccgctaacgccctgattgaaaacaac
agcgggcgtctgggcaaaaagctgtggaccgacggggccgacggtgagcctatctccctc
tattgcgcgtttaacgatcttgatgaagcgcgctttgtcgtcaaccgcatcaaaacctgg
caggagaacggcggggcgcttgagcagtgcgccattctctaccgcagtaacgcccagtcg
cgcgtgctggaagaggcgctgctgcaggccagcatgccgtaccgtatctatggcggcatg
cgcttcttcgaacgccaggagatcaaagatgcgctctcctatctgcgcctgatcgccaac
cgtaacgacgatgcggcgtttgagcgggtggtgaatacgcccactcgcggtatcggcgac
cgcacgctggacgtggtgcgccagacctcgcgcgaccgtcagctcacgctgtggcaggct
tgccgcgagctgttaaaagataaagtcctcgccgggcgcgccgccagcgcgctgcaacgc
tttatggagctgattgacgccctggcgcaggagacggcggatatgccgctgcatgtgcag
accgaccgggtgattaacgactccggcctgcggacgatgtacgagcaggaaaagggcgaa
aaaggccagacgcggatagaaaacttagaagagctggtgacggcaacgcgccagttcagc
tacaacgatgaagatgaggatttaatgccgctgcaggccttcctttctcacgccgcgctg
gaagcgggtgaagggcaggcggatacctggcaggatgcggtgcagctgatgacgctgcac
tcggcgaaaggtctggagttcccgcaggtgtttatcgtcggcgtggaagaggggatgttc
ccgagccagatggcgctggatgaaggtggccgactggaagaggagcgtcgcctggcttac
gtcggcgtgacgcgcgcgatgcagaaactgactctcacctatgcggaaacccgccgtctg
tacggcaaagaggtttaccatcgcccgtcgcgctttatcggcgagctgccggaggcctgt
gtggaagaggtacgcctgcgcgcgacggtgagccgtccggtcagccatcagcggatgggg
acgccgatggcggaaaacgatactggctacaaattgggacagcgcgtacgccatccgaag
tttggcgaaggcaccatcgtgaatctggaaggcagcggcgagcatagccgtttgcaggtc
gccttccaggggcaaggtattaaatggttagtggcggcctatgcccggctggaaacagtg
taa
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