Raoultella ornithinolytica B6: RORB6_18475
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Entry
RORB6_18475 CDS
T02625
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03030
DNA replication
ror03410
Base excision repair
ror03420
Nucleotide excision repair
ror03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RORB6_18475
03410 Base excision repair
RORB6_18475
03420 Nucleotide excision repair
RORB6_18475
03440 Homologous recombination
RORB6_18475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ror03032
]
RORB6_18475
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_18475
Enzymes [BR:
ror01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RORB6_18475
DNA replication proteins [BR:
ror03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RORB6_18475
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RORB6_18475
NER (nucleotide excision repair)
GGR (global genome repair) factors
RORB6_18475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH
HHH_5
XPG_N
Motif
Other DBs
NCBI-ProteinID:
AGJ88375
LinkDB
All DBs
Position
complement(4077913..4080699)
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLMAVPGVEADDVIGT
LAREAEKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVTKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQNK
EVAYLSYQLATIKTDVELDLSCEELHVLPPAADDLLALFKKYEFKRWITDVESGKWMQSK
GVKPAAKPAEAAAVAEEEAEVVATLSAENYVTILDEQTLIEWIEKLKKAPLFAFDTETDS
LDNISANMVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERVLTLLKPLLEDENLLKVGQN
LKYDRGILANYDIELRGIAFDTMLESYILDSVAGRHDMDSLADRWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRV
ERNGVNIDPAVLHAHSQEIARRLIELEQKAYEIAGEEFNLSSPKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPPDYLIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLPLESVSSEQRRSAKAINFGLIYGMSAFGLARQLNIP
RKEAQKYMDLYFERYPGVLDYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAE
RAAINAPMQGTAADIIKRAMIAVDEWLLTEKPRVRMIMQVHDELVFEVHKDDLDAVAKKV
HELMENSTTLAVPLLVEVGSGENWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaacccacttatcctcgttgacggctcctcttacctctaccgg
gcgtatcacgctttcccgccgctgactaacagcgccggagaaccgacaggcgctatgtat
ggcgtgctgaatatgctgcgaagcctgatcctccagtatcaacccacgcacgccgttgtg
gtttttgatgccaaagggaaaactttccgtgacgaactgtttgagcattacaaatcccat
cgtccgccgatgccggacgatctgcgggcgcagatcgaaccgctgcatactatggtgaaa
gcgatggggctgccgctgatggctgtgcctggcgtcgaagcggacgatgtgatcggaact
ctggcgcgcgaagcagaaaaagcgggccgcccggtgctcatcagtaccggtgataaagat
atggcgcagctggtcacgccgggaattaccctgattaataccatgaccaataccattctt
ggcccggaagaagtagtgacgaagtacggcgttccgccagagctgattattgacttcctg
gcgctgatgggcgactcctccgataacattccaggcgtacccggcgtgggcgagaaaacg
gcccaggcgctgctgcaggggctgggtgggctggatacgttgtacgctgagccagaaaaa
attgccggtttgactttccgcggcgccaaaacgatggcggcaaaactggagcagaataaa
gaggtggcctacctctcgtatcagctggcgacgattaaaaccgacgtcgagctggatctg
agctgtgaagagctgcacgtgctgccgccggcggcggatgacctgttggctctgttcaaa
aaatatgaatttaagcgctggatcaccgatgttgaatccggcaaatggatgcagtcaaaa
ggcgttaagccagctgcaaaaccggctgaagcggcggcagtagcggaagaagaagccgag
gtggtagcgacactgtctgcggaaaactacgtcactattcttgatgagcagacgctgatc
gaatggatcgagaagctgaaaaaagcgccgctgtttgcgtttgataccgaaacggacagc
ctggataatatctccgccaatatggtcggcctgtcgtttgccattgagcccggcgttgca
gcctatgtaccggttgcgcatgattatctcgatgcaccggatcagatctcccgcgaacgc
gtactgacgttgttgaaacctctgctggaagacgagaatctgctgaaggtcgggcaaaac
ctgaaatatgaccgcggaattctggcgaactatgatattgagctgcgcggcatcgctttt
gacaccatgctggaatcctacattcttgatagcgtggcgggccgccatgatatggacagc
cttgccgaccgctggctgaagcataaaacgattacctttgaagagattgcaggcaaaggt
aaaaatcagctcacctttaaccagatcgcgctggaagaagctggccgctacgcggcggaa
gatgccgacgtcactctgcagctgcacctgaagatgtggccgaagctgcagcagcatgaa
ggtccgctgaatatctttaagcatattgagatgccgctggtaccggtgctctctcgcgtg
gaacgtaacggcgtcaacattgatccggctgtactgcacgctcattcgcaggagatcgcc
aggcgcctgatcgaactggagcagaaagcctacgagatcgctggtgaagagttcaatctc
tcttcacccaaacagcttcaaactattttgtttgaaaaacaaggcattaaaccgctgaag
aaaacaccgggcggcgcgccttcaacctccgaggaagtgctcgaagaactggcgctggac
tatccgctaccgaaagttattctcgaatatcgcggactggcgaagctgaagtcgacatat
accgacaagctaccgctgatgattaaccccaaaaccggccgcgtgcatacctcttatcac
caggcggtaacggcgacggggcgtctctcctccaccgatcctaacctgcagaacattccg
gtgcgtaacgaagaggggcgtcgtattcgtcaggcatttatcgcgccgccggattacctc
atcgtctctgccgactactcgcaaattgagttgcgcattatggcgcatctgtcgcgtgac
aaggggctgctgaccgcgtttgcggaaggtaaagatatccaccgcgcaacggcggcagag
gtctttggcctgccgctggagagtgtaagcagcgagcagcgtcgcagtgccaaggcgatt
aactttggtctgatttatggcatgagcgcatttggcctcgcacggcagctcaatattccg
cgcaaagaagcgcagaaatatatggacctctattttgagcgctatccgggcgtccttgat
tacatggagcgtacccgggcacaggcaaaagagcagggctatgtcgaaacgctggatggc
cgtcgcctttaccttccggacatcaaatccagcaacggcgcccgtcgtgccggcgccgaa
cgtgcggcgatcaacgccccgatgcaggggacggcggctgacattatcaagcgcgcaatg
atcgccgttgatgaatggctgctgaccgagaagccgcgggtgcggatgatcatgcaggtg
cacgatgaactggtctttgaagtgcacaaagatgaccttgatgccgtggcgaaaaaggtg
cacgaactgatggagaacagcaccacgctggcggtaccgctgctggtggaagtaggaagc
ggagaaaactgggatcaagcgcactaa
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