Raoultella ornithinolytica B6: RORB6_21350
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Entry
RORB6_21350 CDS
T02625
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror02020
Two-component system
ror02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RORB6_21350
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RORB6_21350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ror03021
]
RORB6_21350
Transcription machinery [BR:
ror03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RORB6_21350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AGJ88950
LinkDB
All DBs
Position
complement(4699366..4700799)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVETKE
VEDRESLDTVDALEQKDMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSL
QDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTIRLEDIVESIDDDDIGLEEVEAVLK
RIQRFDPVGVAAKDLRDCLLVQLSQYAKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSGRWVVELNSDSIPRLKIN
QHYAAMGNSARNDADSQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFDQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTILSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaattaaggctaagccaacagcttgccatgacgccacaactgcaa
caggctattcgcctgctgcagctgtccacgttagaactccagcaagaactccagcaggcg
ctggagagtaatccgctgcttgagcaaaccgatcttcacgatgaggtagaaaccaaagag
gtcgaggaccgcgaatcgctggacaccgtcgacgctcttgaacaaaaagatatgccggaa
gagctgccgctcgacgccagctgggatgaaatctacaccgccggcaccccgtccggaaac
ggcgttgattaccaggacgacgagctgcctgtctatcaaggcgaaacgacccaaagcctg
caggattacctgatgtggcaggttgaactgacgccgtttaccgacaccgaccgcgccatt
gccacctcgattgtcgatgccgttgatgacaccggctatctcactattcggctggaagat
attgtcgagagtatcgacgatgacgacattggtctcgaagaagtggaagcggtgctaaag
cgtatccagcgctttgacccggtcggcgtcgcggcaaaagatctgcgcgactgtctgctg
gttcagctttcccaatatgctaaagagacgccgtggctggaagaagcccggctgatcatc
agcgatcatctcgatctgctcgccaaccatgatttccgctccctgatgcgcgtcacccga
ctgaaagaagaggtgctgaaagaagccgttaatctcatccagtccctcgatccgcgcccc
ggtcagtcgattcagaccagcgagccggaatacgtcattcccgacgtgctggtacgtaag
gtcagcggccgctgggtcgtggagcttaactccgacagcatcccacgtctgaagattaat
cagcattacgcggccatgggcaatagcgcgcgcaatgatgcagacagccagtttatccgc
agcaacctgcaggaagctcgctggctgatcaagagtctggaaagccgcaatgatacgctg
ttgcgcgtcagccgctgcatcgtcgaacagcagcaggccttcttcgatcagggtgaagag
ttcatgaaaccgatggtgctggcggatatcgctcaggccgtcgaaatgcatgaatccacc
atttcacgcgttaccacccaaaaatatctgcacagtccgcgcggtatttttgagctgaaa
tatttcttctccagccacgtgaatacggaaggcggcggcgaggcatcgtcgacggccatt
cgtgcgctggtgaagaagttaatcgccgcggagaatcccgcgaagccgttgagtgacagt
aagctgaccaccatcctgtccgaacagggtatcatggtggcacgtcgtaccgtcgctaag
taccgagagtctttatccattccgccatctaaccagcgtaaacaactggtttga
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integrated database retrieval system