Raoultella ornithinolytica B6: RORB6_21540
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Entry
RORB6_21540 CDS
T02625
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RORB6_21540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ror03019
]
RORB6_21540
03016 Transfer RNA biogenesis [BR:
ror03016
]
RORB6_21540
Enzymes [BR:
ror01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RORB6_21540
Messenger RNA biogenesis [BR:
ror03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RORB6_21540
Transfer RNA biogenesis [BR:
ror03016
]
Prokaryotic type
tRNA degradation factors
RORB6_21540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
S1_RRP5
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
AGJ88988
LinkDB
All DBs
Position
4735060..4737195
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQIDVIKAETIATLIAEDETLDANELGEILHAI
EKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTTEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAQHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAAEQTQPAAAPEAPVAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgatcgttcgtaaattccagtacggccaacataccgtaacgctggaaacc
ggcatgatggctcgtcaggccactgctgctgtcatggttagcatggatgacactgcggta
ttcgttaccgttgttggtcagaaaaaagcgaagccaggtcaggacttcttcccgctgact
gttaactatcaagagcgtacttacgcagcaggtaaaatcccgggtggtttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgctaccgttgtttccgtt
aacccgcaggttaacccggatatcgtggcgatgattggtgcttccgcagcgctgtctctg
tcaggtattccgttcaacggtcctatcggttctgctcgcgttggttatatcaacgaccag
tacgttctgaacccgactcaggatgagctgaaagaaagtaagctggacctggtggttgcc
ggtaccgaagcggccgtgctgatggttgaatctgaagctgaactgctgagcgaagaccag
atgctgggtgcggtggtctttggccacgaacagcagcagattgtcattcagaacatcaac
gacctggttaaagaagcgggtaaaccgcgctgggactggcagcctgaagccgtcaacgaa
gcgctgaatgcgcgcgttgctgccctggccgaagcgcgtctgagcgatgcttaccgtatc
actgataaacaagagcgttacgctcagattgacgtgatcaaagcggaaactatcgcgact
ctgattgctgaagacgaaaccctggacgctaacgaactgggtgaaatcctgcacgctatc
gagaaaaatgccgtacgtagccgcgtactggcaggcgagccgcgtatcgatggccgtgaa
aaagatatgattcgtggtctggatgttcgtactggcgtactgccgcgtactcacggttcc
gcactgttcacccgtggcgaaactcaggcgctggtgactgcgaccctgggtaccgcacgt
gatgcgcagaacattgacgaactgatgggcgagcgtactgactccttcctgttccactac
aacttccctccgtactctgtcggtgagactggcatggtgggttcaccgaagcgtcgtgaa
atcggtcacggtcgtctggctaagcgcggcgtactggccgtgatgccgaccaccgaagaa
ttcccgtacaccgttcgcgtggtatctgaaatcaccgaatctaacggttcttcctccatg
gcttccgtgtgcggtgcttctctggcgctgatggatgctggtgtgccggtgaaggctgcc
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaactacgtcgttctgtctgac
attctgggtgacgaagaccacctcggtgatatggacttcaaagtggcgggttcccgcgac
ggtatctctgcgctgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcactgaaccaggcgaaaggtgcacgtctgcacatcctgggcgtcatggagcaggcg
attaacgcgccgcgcggcgatatctctgaattcgcaccgcgtatccacaccatcaagatc
agcccggacaagatcaaagacgtgatcggtaaaggcggctctgtgattcgtgcgctgact
gaagagaccggtactaccatcgaaatcgaagatgacggtaccgtgaagatcgcagcaacc
gatggcgataaagcgcagcacgctatccgtcgtatcgaagagatcacggctgagatcgaa
gttggccgtgtttacaatggtaaagtgacccgcatcgttgactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggtccacatctctcagatcgctgacaagcgcgtagag
aaagtgaccgattacctgcagatgggtcaggaagtgccggttaaagttctggaagttgac
cgtcagggccgcgttcgtctgagcattaaagaagcagctgaacagactcagcctgccgct
gcaccggaagctccggttgctgagcaaggcgagtaa
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