Raoultella ornithinolytica B6: RORB6_21550
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Entry
RORB6_21550 CDS
T02625
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ror
Raoultella ornithinolytica B6
Pathway
ror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RORB6_21550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ror03019
]
RORB6_21550
03009 Ribosome biogenesis [BR:
ror03009
]
RORB6_21550
Enzymes [BR:
ror01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RORB6_21550
Messenger RNA biogenesis [BR:
ror03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RORB6_21550
Ribosome biogenesis [BR:
ror03009
]
Prokaryotic type
rRNA helicases
RORB6_21550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AGJ88990
LinkDB
All DBs
Position
4738364..4740331
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AA seq
655 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGE
DRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGERREGGRAFGGERREG
GRNFGGGERREGGRGDGRRFSGERRDGARAPRRDDAAAAPRRDDSAGRRRFGGDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctt
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaatcttgatcctgagctgaaagcaccgcaaattctggtgctg
gcgccgacccgcgaactggcggtacaggtcgctgaagcaatgacggacttctctaaacat
atgcgcggcgtaaacgtggtagccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccacaaatcgttgtgggtaccccgggtcgtctgctggaccacctg
aagcgcggtactcttgatctctctaaactgagcggtctggtactggatgaagctgacgaa
atgttgcgtatgggcttcatcgaagacgtagaaacgattatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgtcacgactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggctgaagcgctggagcgtagcggctacaacagcgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcagactctggagcgtctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggctcgtggcctcgacgttgagcgtatcagcctggttgttaactat
gatatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgtgaacgccgcctgctgcgtaacatc
gaacgcaccatgaagctgacgattccggaagtagaactgccgaacgcagaactgctgggc
aaacgccgcctggaaaaatttgccgctaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgctgaaggtgaagagctggat
atcgaaactctggccgcagctctgctgaaaatggctcagggcgaacgtccgctgattctg
ccgccggatgcaccgatgcgtcctaagcgtgaattccgcgaccgtgacgatcgtttcgag
cgccgtggcgaccgcaacgaccgtggcccgcgtggcgaccgtccggagcgtagcggtgaa
gatcgtcctaagcgcgaacgtcgtgacgtgggcgatatggagctgtatcgcattgaagtg
ggccgcgatgatggcgttgaagttcgtcatattgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggtacccactccacgatcgaactg
ccgaaaggcatgccgggcgaagttctgcagcacttcactcgtactcgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtccggaccgtggcggcgaacgt
cgtggcggtggtgagcgccgtgaaggcggtcgcgcattcggtggcgaacgtcgtgaaggc
ggccgcaacttcggtggtggcgagcgtcgcgaaggcggccgtggtgatggtcgtcgtttc
agcggcgaacgtcgtgacggtgctcgtgctccgcgtcgtgatgatgccgctgcggctccg
cgccgtgatgattccgctggccgtcgtcgtttcggtggcgatgcgtaa
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