Klebsiella ornithinolytica B6: RORB6_22900
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Entry
RORB6_22900 CDS
T02625
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ror
Klebsiella ornithinolytica B6
Pathway
ror03410
Base excision repair
ror03430
Mismatch repair
ror03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RORB6_22900
03430 Mismatch repair
RORB6_22900
03440 Homologous recombination
RORB6_22900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ror03400
]
RORB6_22900
DNA repair and recombination proteins [BR:
ror03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RORB6_22900
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RORB6_22900
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RORB6_22900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
AGJ89260
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Position
5013226..5014959
Genome browser
AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVVEGAELPADLPPLLQRLYASRGVLHAQELERSVKGMLPWTQLNGIEKA
VEMLYDAFRQERHIVVVGDFDADGATSTALSVLALRALGYSNVSYLVPNRFEDGYGLSPE
VVDQAHARGAQMIMTVDNGISSHAGVDRAHALGIPVVVTDHHLPGETLPAAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRTFLRDKNWFEERGITPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNVGEARMLANELDALNQTRKEIEQGMQAEALTLCQQLERSGDTLPGGLAM
YHPQWHQGVVGILASRIKERFHRPVIAFAPTGDGLLKGSGRSIQGLHMRDALERLDTLHP
GLILKFGGHAMAAGLSLEEARFEEFQLRFGELVTEWLDPALLQGEVISDGPLETAEMSME
VAHLLREAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTS
IWPDNGVREVTLAYKLDINEFRGNRSLQLIIDHLWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaactacgccgccgtgaggtggttgaaggggctgagctccccgcc
gacctgccgccgctgctgcagcggctgtacgccagccgcggcgtcctgcatgcccaggag
ctcgaacgcagcgtcaaaggcatgctgccgtggacgcagctgaacggcatcgaaaaagcc
gttgagatgctctacgacgcattcaggcaagagcggcatatcgtcgtggtcggtgatttt
gacgccgatggcgccaccagtaccgcgctgagcgtgctggcgctgcgcgcgctgggctac
agcaatgtctcctatctggtgccaaatcgttttgaagatggctacgggttaagccccgaa
gtagtcgatcaggcccacgcccgcggggcgcagatgattatgaccgtggataacggcatc
tcttcccatgccggcgtcgatcgtgcccacgcattggggatcccggtggtcgtgaccgat
caccatctaccgggtgagacgctgccggcagcggaagccattgtgaaccccaatctgcgc
gactgcgatttcccctcgaaatcgctggccggcgtcggggtagcgttctatttgatgctg
gcgctgcgcacgttcctgcgcgataaaaactggtttgaagaacggggcatcacgccgccg
aatcttgccgaactgctggatctggtcgcgctcgggacggtggctgacgttgtgccgctg
gatgccaataaccgcattctcacctggcaagggctgagccgtatccgtgccggtaagtgc
cgtccggggatcaaagcgctgctggagattgccaaccgcgatccgcaaaagctggccgcc
agcgacctggggtttgccctgggaccgcggctgaatgcggcaggccggctggatgatatg
tcggtcggcgtggcgctgctgttgtgtgataacgtcggcgaagcgcggatgctggctaat
gaactggatgcgctgaaccagacgcgcaaagagattgagcaagggatgcaggcggaggcg
ctcacgctgtgccagcagctggaacgcagcggcgacacgctgcccggggggctggcgatg
tatcatccgcagtggcaccagggcgtggtggggattctggcgtcacggattaaagagcgt
ttccatcgcccggttatcgccttcgccccaaccggcgacgggctgttaaaaggctccggg
cgctctatccaggggttgcacatgcgcgatgcgcttgagcgccttgatacgctgcatccg
ggactgattctcaagttcggcggccatgcgatggcggcggggctgtcgctggaagaggcg
cgttttgaggagtttcagctgcgtttcggcgaactggtcaccgagtggctggatccggcg
ctgttgcagggagaagtgatctctgacggcccgctggaaacggctgagatgagcatggaa
gttgcgcatctgcttcgtgaggcgggaccctggggacagatgttcccggagccgctgttt
gacggtcgtttccgcctgttacagcagcgcctggtgggcgagcgacatcttaaagtgatg
gtcgaaccggttggcggcggcccgctgctggacgggattgccttcaacgttgatacttcg
atttggccggataacggcgtacgcgaagtcactctggcctataagctcgatattaatgag
ttccgaggcaaccgcagcctgcagcttatcattgaccatctctggccggtctga
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