Roseomonas sp. FDAARGOS_362: CTJ15_13725
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Entry
CTJ15_13725 CDS
T05160
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ros
Roseomonas sp. FDAARGOS_362
Pathway
ros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTJ15_13725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ros03019
]
CTJ15_13725
03009 Ribosome biogenesis [BR:
ros03009
]
CTJ15_13725
Enzymes [BR:
ros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTJ15_13725
Messenger RNA biogenesis [BR:
ros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTJ15_13725
Ribosome biogenesis [BR:
ros03009
]
Prokaryotic type
rRNA helicases
CTJ15_13725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Scaffolding_pro
Motif
Other DBs
NCBI-ProteinID:
ATR21262
UniProt:
A0A2D2H5H0
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All DBs
Position
complement(1912771..1914507)
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AA seq
578 aa
AA seq
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MPFPDDLPAPLLLALAERGYAEPTPVQAAVLAADTAGRDLLVSAQTGSGKTVAYGLAMAS
NLLGTAERLPPAGTPLALVIAPTRELALQVKTELAWLYGSAGGRVVSCVGGMDPVAERRD
LSRGAHVVVGTPGRLRDHLDRGNLRPDTLQVVVMDEADEMLDLGFREELEAILDTLPDPH
RTLLFSATVPHEIATLARSYQKDAQRIEVKSDGAGHGDIEHRAITIAPHEIERAVVNILR
FEDPRLAMVFCATRAMVARLHGNLTERGFSTVALSGELSQSERTRALQSLRDGRARVCVA
TDVAARGIDLPDLGLVIHAELPRDPETLTHRSGRTGRAGRKGISVLLVPYNRRRTGERLL
AAARVQASWGPPPSAETIRAKDNERLSVQAGELVAEEAAEDDLALARGLLEKNAPEAVAA
ALIRTLRGPLPAPEELSDTNDRTPRERPERQGGPEGVWFRASVGRNENADPRWLLPFLCR
RGHVTRGEIGRIRILGRETQFEVAAAAASRFAAAARRAEGEDAHIQVEPLGHGSPVRPPS
FSGPREGQGRDRPRGGPGGGHGRPQSFRHAGPPRHSRG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgccctttcctgacgatcttcccgcaccccttctcctggccctggccgagcgcggctat
gccgagccgacgccggtgcaggccgccgtcctcgccgccgacacggcggggcgcgacctg
ctggtttccgcccagaccggctccggcaagaccgtggcctatggcttggccatggccagc
aaccttctcggcacggccgagcgccttccccccgccggcacgccgctcgccctggtgatc
gcgccgacgcgcgagctggcactgcaggtcaagaccgagctggcctggctctatggcagc
gccgggggccgggtcgtgtcctgcgtcggtggcatggacccggtggccgagcggcgtgac
ctgtcgcgcggtgcccatgtggtggtcggcacgccgggccgcctgcgcgaccacctggac
cgcggcaacctgcggccggacacgctgcaggtcgtggtgatggacgaggcggacgagatg
ctggacctcggcttccgcgaggagctggaggccatcctcgacacgctgccggacccgcac
cggacgctgctcttctcggctaccgtgccgcacgagatcgccacgctggcgcgttcctac
cagaaggacgcgcagcgcatcgaggtgaagagcgacggcgccgggcatggcgacatcgag
caccgcgccatcaccatcgccccgcacgagatcgagcgggcggtggtgaacatcctgcgc
ttcgaggacccacgcctcgccatggtgttctgcgccacccgcgccatggtggcccggctg
cacggcaacctgaccgagcgcggcttctccaccgtggcgctgtccggcgagctgtcgcag
tccgagcgcacccgtgcgctgcagtcgctgcgcgacgggcgggcgcgggtctgcgtcgcc
accgacgtggcggcgcgcggcatcgacctgccggatctggggctggtgatccatgccgag
ctgccgcgcgaccccgagaccctgacccaccgttccggccgcaccggccgggccgggcgg
aagggcatcagcgtgctgctggtgccctataaccgccgccgcaccggggagcggctgctg
gccgccgcccgggtgcaggcgagctgggggccaccgccttccgccgagacgatccgcgcc
aaggacaacgagcgcctgtccgtccaggccggcgagctggtcgccgaggaggcggcggag
gacgatctggcgctggcccgcggcctgctggagaagaacgcgcccgaggcggtcgccgcc
gccctgatccgcaccctgcgcggcccgctgccggcgccggaggagctgtcggacaccaat
gaccgcaccccgcgggagcggccggagcgccagggcgggccggagggcgtctggttccgc
gccagcgtcgggcgcaacgagaatgccgatccccgctggctgctgcccttcctgtgccgg
cgtggccatgtcacgcgtggggagatcggccggatccgcatcctgggccgcgagacccag
ttcgaggtggccgccgccgccgccagccgcttcgccgccgccgcgcgccgggcggagggc
gaggacgcgcatatccaggtggaaccgctggggcatggcagccccgtgcgcccgccttcc
ttcagcgggccgcgcgagggccagggccgggatcgcccccgtggcggccccgggggcggg
catgggcgtccccagtccttccgccacgccggaccgccgaggcattcgcgcggctga
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