Roseomonas sp. FDAARGOS_362: CTJ15_13800
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Entry
CTJ15_13800 CDS
T05160
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ros
Roseomonas sp. FDAARGOS_362
Pathway
ros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTJ15_13800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ros03019
]
CTJ15_13800
03009 Ribosome biogenesis [BR:
ros03009
]
CTJ15_13800
Enzymes [BR:
ros01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CTJ15_13800
Messenger RNA biogenesis [BR:
ros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTJ15_13800
Ribosome biogenesis [BR:
ros03009
]
Prokaryotic type
rRNA processing factors
CTJ15_13800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATR21276
UniProt:
A0A2D2H5F9
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All DBs
Position
1935692..1939084
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AA seq
1130 aa
AA seq
DB search
MTKRMLIDASHPEETRLVVMDGNRIEDFDVEAADRLPLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQRLLEMQAQEAEEEEEDEAELDTAAERPAPEDDR
DLRRREAREPRGSRSGRSRSVSHAAPEEPPVDTAPPAGDAPAAPEAMASGTAAPAPGGEA
ANPGPHQVFGEAIPELPPGPSLQAPREAGEETAPLPIARSEAAPTDAAPESATHEPARAP
DAASGTGTPGEAQEGNVQEGSVQEGNGGTPRPGRAQPMSMHVDQVSEGDPVREAGDALVL
DDTPEVPPETLGGDAEGSGEEDRSRERRIPPRFLRHYKIQEVIRRRQIMLVQVVKEERGN
KGAALTTYISLAGRFSVLMPNSPRGGGVSRKITQVADRKRLREAVEEMSLPKGMSIIVRT
AGAQRPKPEIRRDGEYLLRLWDDIRERTMGSTAPALIYEEADLIKRSLRDSYGRDIDDVE
VEGEAAWKQARDFMRMIMPQHERRVRLYRDPVVPLFVKAGVEQQLDAMMSPVVQLRSGGY
IVINQTEALVAIDVNSGRNTRDRHIEDTALRTNMEASEEIARQLRLRDLAGLIVIDFIDM
ESSKHDAQVERRLKESLRTDRARIQVGRISHFGLLEMSRQRLRPSLTEHAFMTCPHCQGR
GIVRSLESSALHVLRAIEEEGAKRRASEIMVQAAEPVAMHILNNKREWLANIEARFNMHV
LLSGEHEMSEAQFRIERLKAQTMPAPQVASRAPALRMDYLPETVAEEPEEVEDEPEAEAA
PAGDDKAEHRPEGNADEKGENGRRRRRRRRGGRREGGERPEAEAAGEGDADQEQPVPSDE
AGPPDQPSDQSPHGAPALPAEAETAPDEEKPGGKSPEALADERGEESRGRRRGRRGGRRR
QEEGSEQTEESSEAAPPRRGERAASRYTGPTPADPFGGAYDPVMDALAAAEAAAEAAARR
LTAGELPPLAVSITAGPPPEIPAVLSGEDAATAPLPVAGEAEAPAQPPEAAPAEASAPAG
EPAGEATEEAVVVATLSEAVVEAPVAEAPVAEAPVAEAMPPANEAPAAPDAAAQAVEPAG
TAADATSAPIGTPIGTPTGAAEPVVGEPAKPVVLDGTSPSQARRAGWWRR
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgcatgctgatcgacgcctcccacccggaagagacccggctggtggtgatg
gatggcaaccggatcgaggacttcgacgtcgaggcggctgaccgcctccccctcaagggc
aacatctacctggcgaaggtggtccgcgtggagccgagcctccaggcggccttcgtcgag
tatggcggcaaccgccacggcttcctggccttcagcgaaatccaccccgactactaccag
atccccgtcgccgaccggcagcgcctgctggagatgcaggcgcaggaggccgaggaggag
gaggaggacgaggcggagctcgacaccgccgccgagcgccccgcccccgaggacgaccgt
gacctgcgccgccgcgaggcgcgtgagccccgtggctcccgctccggccgctcgcgttcc
gtcagccacgccgccccggaagagccgccggtggacaccgccccgcccgccggggacgcc
cccgccgcgccggaggccatggcatccgggaccgccgccccggcgccgggcggcgaggcc
gcgaaccccggcccgcaccaggtcttcggcgaagccatccccgagcttccccctggccct
tcccttcaggcaccgcgcgaggcgggcgaggaaaccgcgcccctccccatcgcccgcagc
gaggcggccccgacggacgccgccccggaatccgcgacccatgagccggcacgggccccg
gacgcggcctccgggaccggcacgcccggcgaggcccaggaaggcaacgtccaggaaggc
agcgtccaggaaggcaacggcggcaccccccgccccggtcgcgcccagcccatgtccatg
catgtggaccaggtctccgagggcgatccggtgcgcgaggccggcgatgccctggtcctc
gacgacacgcccgaagtcccgcccgagaccctgggcggcgatgccgagggcagtggcgag
gaggaccgcagccgcgagcgccgcatcccgccccgcttcctgcggcactacaagatccag
gaggtgatccgccgccggcagatcatgctggtgcaggtcgtgaaggaggagcgcggcaac
aagggcgcggcgctcaccacctacatctcgctggccggccgcttctcggtcctgatgccg
aactcgccgcgcggcggcggcgtctcgcgcaagatcacccaggtcgccgaccgcaagcgc
ctgcgcgaggcggtggaggagatgagcctgcccaagggcatgagcatcatcgtccgcacc
gccggcgcccagcggccgaagcccgagatccggcgcgacggcgagtacctgctccgcctc
tgggacgacatccgcgagcggaccatgggctccaccgccccggccctgatctacgaggaa
gcggacctcatcaagcggtcgctgcgcgacagctacggccgcgacatcgacgacgtggag
gtcgagggcgaggccgcctggaagcaggcccgcgacttcatgcgcatgatcatgccgcag
cacgagcggcgcgtgcgcctgtaccgcgacccggtggtgccgctcttcgtcaaggcgggg
gtggaacagcagctcgacgcgatgatgtcgccggtcgtgcagctccgctccggcggctac
atcgtcatcaaccagaccgaggcgctggtcgccatcgacgtgaactccggccgcaacacc
cgcgaccggcacatcgaggacacggcccttcgcaccaacatggaggcgtcggaggagatc
gcgcggcagctccgcctgcgcgacctcgccggcctcatcgtcatcgacttcatcgacatg
gagtcgagcaagcacgacgcccaggtcgagcgccgcctgaaggaatcgctgcgcaccgac
cgcgcccgcatccaggtcggccgcatcagccatttcggcctgctggagatgagccgccag
cggctgcgccccagcctgaccgagcacgccttcatgacctgcccgcactgccagggccgg
ggcatcgtgcgctcgctggaaagcagcgcgctgcacgtcctgcgcgcgatcgaggaggaa
ggcgccaagcgccgcgcctcggagatcatggtccaggccgccgagccggtggccatgcac
atcctgaacaacaagcgcgaatggctcgccaacatcgaggcgcgcttcaacatgcacgtc
ctgctgtcgggcgagcatgagatgtccgaggcgcagttccgcatcgagcgcctgaaggcc
cagaccatgccggcaccgcaggtggcgagccgtgcccccgccctgcgcatggactacctg
cccgagacggtggccgaggagccggaggaggtcgaggacgagccggaggccgaggccgcc
ccggcgggcgacgacaaggccgagcaccggcccgagggcaatgcggacgagaagggcgag
aacggccgccgccgccgccgccgccgccgtggcggccgccgcgagggtggcgagcgcccg
gaggcggaggctgcgggcgaaggcgacgccgaccaggagcagccggtcccgtcggacgag
gccggcccgcccgatcagccctccgaccagtccccccatggggccccggccctccccgcc
gaggcggaaaccgctccggacgaggagaagcccggcgggaagtccccggaggccctggcg
gacgagcgcggcgaggaaagccgtggccgccgccgtggccgccgcggcggtcgccgccgc
caggaggaaggcagcgagcagacggaagaatcctccgaggccgccccgccgcgccgtggc
gagcgtgccgccagccgctacaccgggccgaccccggccgatcccttcggcggcgcctat
gatccggtgatggatgccctggccgccgccgaggctgccgccgaggccgccgcccgccgc
ctgaccgccggcgagctgccgccgctggccgtgtcgatcaccgccgggccgccgccggag
atcccggccgtgctgagcggcgaggatgccgcgacggcgcccctgcccgtggcgggcgag
gccgaagccccagcccagccccccgaagccgcccccgccgaggcatccgcgccggccggc
gagccggccggggaggccaccgaggaagccgtggtcgtcgccaccctgtcggaagcggtc
gtggaagcccccgtcgcggaagcccccgtcgcggaagcccccgtcgcggaagcgatgccc
ccggccaacgaggccccggcggctccggatgccgcggcacaggctgtcgaacccgccgga
acggcggcggacgccaccagcgcccccattggcacccccattggcacccccactggcgcc
gccgagcccgtcgtgggcgagccggcgaagcccgtggtcctggacgggacctcgccgtcc
caggcgcgccgcgcgggatggtggcggcgttga
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