Rossellomorea sp. y25: V2W31_19870
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Entry
V2W31_19870 CDS
T10157
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ross Rossellomorea sp. y25
Pathway
ross03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ross00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V2W31_19870 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ross03019
]
V2W31_19870 (rnr)
03016 Transfer RNA biogenesis [BR:
ross03016
]
V2W31_19870 (rnr)
Enzymes [BR:
ross01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V2W31_19870 (rnr)
Messenger RNA biogenesis [BR:
ross03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V2W31_19870 (rnr)
Transfer RNA biogenesis [BR:
ross03016
]
Prokaryotic type
tRNA degradation factors
V2W31_19870 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
RNase_II_C_S1
CSD
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WWO81180
LinkDB
All DBs
Position
complement(3940131..3942473)
Genome browser
AA seq
780 aa
AA seq
DB search
MDENIKEHVDRLLSYMKEEAYKPLTVQELEEAFGIKGSTNFKDFVKALVVMEEKGLVVRT
RSNRYGLPEKMNLVRGKVSAHAKGFAFVIPEESGMDDIFIPPNETNNAMHGDIVLVRVST
SSSGSRREGTVVRIVERGVDQMVGTFTESKHFGFVIPDDKKFASDIFIPKSAQMGAAEGH
KVVVKLTSYPEGRKSAEGEVIEILGHKNDPGVDILSIIHKHGIDVEFPEEVMDQANKVPS
EIDESEIPNRKDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTYYVKESS
PIDQEAFDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCDMEISPDGDVVKHEI
FQSVIKTTERMTYSDVNKILVDKDEELRKKYEPLVPMFEEMEDLAQVLRTKRMKRGAIDF
DFKEAKVLVNDEGEPTDVVLRERSVAEKLIEEFMLVANETVAEHFHWMEVPFIYRIHEDP
KEDKLQRFFEFITNFGLIVKGTANSIHPRALQEIVEDVQGEPEEMVVSTMMLRSMQQAKY
DPESLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKIDQATREKWGAQMGHIAE
HTSSRERRAVDAERETDELKKAEYMEDKVGEEYDGIISSVTNFGLFVELPNTIEGLVHVS
YMTDDYYRFDERHLAMIGERTANVFRIGDEITVRVVSVNKDERSIDFEIVGMKNNRKERE
DRVRSIRSDKGKSDRGKSNRSSDRKKDGEWSTRPPKNNKKKKTNKKHFENAPRSKRKKKK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaatattaaagagcatgtggataggctcctttcctatatgaaggaagaagca
tacaagccattgacggtacaggagcttgaagaagcattcggaattaaagggtccacgaac
ttcaaggacttcgtaaaggctcttgtcgtaatggaagagaaggggttagtcgttcgcact
agaagcaatcgctacggcctgcctgaaaaaatgaatctggtaagagggaaagtatccgct
catgcaaaaggatttgcgtttgtgataccggaagaatccgggatggacgatatcttcatc
cctcctaatgaaacgaataacgccatgcacggcgatattgtattagtaagagtgtctact
tcttcttcaggttcgagaagagaaggaaccgtcgtccggatcgtcgaacgtggtgtcgac
caaatggttggtacgtttacggaaagtaagcatttcggattcgtgattcccgatgataaa
aagtttgccagtgacatctttatccctaaatctgctcaaatgggggcagccgaaggacat
aaggtcgtcgtgaaattaacatcttatcctgagggacgtaaaagtgccgaaggggaagtc
atcgaaatcctcgggcataaaaatgatccgggagtcgatattctgtcgatcatccataag
catgggattgacgttgaattccctgaagaggtcatggatcaggcgaataaggtgccaagt
gaaatcgacgaatcggaaattccaaaccggaaagaccttcgtgatcagaccatcgtcacg
atcgatggcgcagacgctaaggatctggatgatgccgtaacggtgacgaaactggacaat
gggaactacaagcttggagtacatattgcagacgtcacgtattatgtcaaagaaagctcc
ccaattgatcaggaagcctttgatagaggaacttcagtatatctggtagaccgggtaatc
ccaatgattcctcaccggttatcgaatggtatttgttctcttaatcccaaggtcgatcgt
ttaactctatcctgtgatatggaaatttcacctgatggcgatgtcgtgaaacacgaaatc
ttccaaagcgtcattaaaactacggaacgaatgacgtattctgatgtcaacaaaattctt
gtcgataaagacgaagaacttcgaaaaaaatacgagccgttagtaccgatgttcgaagaa
atggaagatttagcgcaggttcttcgtacgaaacgcatgaagcgtggagccatcgacttc
gatttcaaagaagcgaaagtacttgtcaatgatgagggagaaccgacggatgtggtcctg
cgtgaacgctcggtagccgaaaagctgatcgaagagttcatgttagtggcaaatgagacg
gttgctgaacatttccactggatggaagtgccgttcatctatcgtattcatgaagacccg
aaggaagacaagttgcagcgcttcttcgaattcattacgaatttcggtctgattgtaaaa
gggacagcgaattcgattcaccctcgggctcttcaagagattgtggaggacgtccagggg
gaacctgaagagatggtcgtttcgacgatgatgcttcgttccatgcagcaggcgaaatat
gaccctgaaagcctcggtcacttcggactggcgacagagttctacactcatttcacttca
ccgatccgtcgttaccctgacttgattgttcaccgtttgatcagaacttatttaattgaa
gggaaaattgatcaggcaacccgtgaaaaatggggtgctcaaatgggccacatcgctgag
cacacatcaagccgtgagcgtcgtgcagtggatgcagagcgtgagacagatgaactgaaa
aaagcagagtatatggaagacaaagtgggagaagagtacgacggtatcatcagttccgtt
acgaacttcggactgtttgtcgaattgcctaacacgattgaaggtcttgttcatgtgagc
tatatgacggacgactactaccggtttgatgagcgtcacctcgccatgatcggtgaaaga
acggcaaacgtattccgaatcggtgacgagatcaccgttcgtgtcgtgagcgtcaataaa
gatgagcgttccatagactttgaaatcgtaggaatgaagaataatcgcaaggagcgcgaa
gaccgcgttcgctcgatccgctctgataaaggaaaatcggaccgtggaaaatcgaatcga
tcttcagaccgtaaaaaggacggcgagtggtcaacgcgtccgccgaaaaacaacaagaag
aaaaagacgaataagaaacactttgaaaatgcgcctcgaagcaaacgtaaaaagaagaaa
taa
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