Roseivivax sp. THAF197b: FIV09_02300
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Entry
FIV09_02300 CDS
T06253
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rot
Roseivivax sp. THAF197b
Pathway
rot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIV09_02300 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rot03021
]
FIV09_02300 (rpoB)
03400 DNA repair and recombination proteins [BR:
rot03400
]
FIV09_02300 (rpoB)
Enzymes [BR:
rot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIV09_02300 (rpoB)
Transcription machinery [BR:
rot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIV09_02300 (rpoB)
DNA repair and recombination proteins [BR:
rot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIV09_02300 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QFS81648
LinkDB
All DBs
Position
442203..446342
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQSYLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQLEPMDGEGIKGVFQSV
FPIKDFNETSILEFVSYELEKPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVDFELEK
GKGWKTKFFPDRVRGTRPTHDLIDADTGEVIAEAGKKVTPRAVKKLKDEGKVENLLVPFD
DIVGRFVAKDIINEETGAIYAEAGDELTWTVDKDGEVTGGTLKELVDAGVTSIPVLDIDN
ITVGPYMRNTMANDKNMNRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDGERYDLSAV
GRVKMNMRLALDKPDTQRTLDREDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVKDSQVTDEVHYMSATEEMRHTIAQANASLNDDGKFVNDLVNTRQSG
DYTLAPADSVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRSEAPLV
GTGIEGIVARDSGASIMAKRGGIIDQVDATRIVVRATQDLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVTVGMEVEKGEVIADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
ISQDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEIESLARDRDDELAILDRNIYARLKSMILGKTAVKGPKGVKANSEITEEL
LDSLTRSQWWQLALGEEEEAKFVEALNEQYEAQKRALDARFDDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKIDDALQDYRRTGDLSPVREAMHTAYGDDVFDEGIASMSDDE
LVAAASNVTRGVPIATPVFDGAKEPDVNDALKRAGFDQSGQSILFDGRTGEQFARPVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDEE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatcctaccttggccagaaacgtcttcgtaaatattacggaaaaattcgtgaa
gtgctggagatgccgaacctcatcgaggttcagaaatcctcctacgacctgttcctgaag
tccggcgaccagctggagccgatggacggagaaggcatcaagggtgtcttccagtcggtc
ttcccgatcaaggatttcaacgagacgtccatcctcgaattcgtgtcctacgagctcgag
aagcccaaatacgatgtcgatgaatgccagcagcgcgacatgacctatgccgcgccgctg
aaggtgaccctgcgtctcatcgtgttcgatgtggacgaggataccggcgcgaagtccgtt
aaggacatcaaggagcaggacgtcttcatgggcgacatgcccctgatgacaccgaacggc
acgttcatcgtcaacggcaccgagcgcgtcatcgtctcccagatgcaccgctccccgggc
gtgttcttcgatcacgacaagggcaagacgcacagctcgggcaagctgctctttgcctgc
cgcatcattccctatcgcggctcgtggctcgacttcgagttcgacgccaaggatctcgtc
ttcgcccgcatcgaccgccgccggaagcttccggtgacgacgctcctctacgcgcttggt
ctcgaccaggaagcgatcatggatgcgtattacgacacggtcgatttcgagctcgagaag
ggcaagggctggaagacgaagttcttccccgaccgcgtgcgcggcacccgtccaacccat
gacctgatcgacgccgataccggcgaagtgatcgccgaggcgggcaagaaagtcacgccg
cgcgcggtcaagaagctgaaggacgagggcaaggtcgagaatcttctcgtgcccttcgac
gatatcgtgggccggttcgtcgccaaggacatcatcaacgaagagacgggcgcgatctac
gccgaggccggcgatgagctgacctggaccgtcgacaaggatggtgaagtcaccggcggc
acgctcaaggagcttgtcgatgcaggcgtgaccagcatccccgtcctcgacatcgataac
atcaccgtgggcccgtacatgcggaacaccatggcgaacgacaagaacatgaaccgcgac
accgcgctcatggatatctatcgcgtcatgcgtccgggcgagccccccaccgtggaggcc
gcctcggcgctcttcgacacgctgttcttcgatggcgagcgctacgacctgtcggccgtg
ggccgcgtgaagatgaacatgcgtctcgcgctcgacaagcccgacacccagcgcacgctg
gaccgcgaagacatcgtcgcctgcatcaaggcgctggtggatctgcgcgacgggcgcggc
gatatcgacgacatcgaccacctcggcaaccgccgggtgcgttcggtcggcgagctgatg
gaaaaccagtaccgcgtgggtctgctgcgcatggagcgcgccatcaaggagcgcatgtcg
tcggtcgagatcgacaccgtcatgccgcaggacctgatcaacgcgaagcccgccgcggcg
gcggtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtgacgcacaagcggcgtctgtcggccctcgggcccggcggtctgacgcgc
gagcgcgcaggcttcgaggtgcgcgacgtgcacccgacccattacggtcgcatgtgcccg
atcgagacgccggaaggtccgaacatcggcctgatcaactcgctcgccaccttcgcgcgg
gtgaacaagtacggcttcatcgaaacgccctaccgcgtggtcaaggacagccaggtgacc
gatgaggtccactacatgtccgccaccgaggagatgcgccacacgatcgcgcaggccaac
gcgtcgctcaacgatgacggcaagttcgtcaacgatctggttaacacccgccagtcgggc
gactacacgctggcgcctgcggacagtgtcgatctcatcgacgtctcgccgaagcagttg
gtgtcggtcgcggcctcgctcatcccgttcctcgagaacgacgacgcgaaccgcgctctg
atgggctcgaacatgcagcggcaggccgtgccgacgctgcgctccgaagcgccgctcgtg
ggcacgggcatcgagggcatcgtcgcccgcgattccggcgcgtccatcatggccaagcgc
ggcggcatcatcgaccaggtcgacgcgacccggatcgttgtgcgcgcaacgcaggacctt
gagccgggcgatccgggcgtggacatctaccgtctgcgcaagttccagcgttcgaaccag
aacacctgcatcaaccagcgtccgctggtcaccgtgggcatggaagtcgagaagggtgaa
gtgatcgcggatggcccgtccacggatatgggggaactggcgctcggcaagaacgtcatc
gtcgccttcatgccctggaacggctacaactacgaggactccatcctcatctctgagcgg
atctcgcaggacgacgtcttcacctcggtccatatcgaggaattcgaagtcgccgcccgt
gacaccaagctcgggcccgaggagatcacccgcgacatcccgaacgtgggcgaggaggcg
ctgcgcaacctcgacgaggcgggcatcgtctatatcggtgccgatgtggagccgggcgat
atcctcgtgggcaagatcacgccgaagggcgaaagcccgatgacgccggaagagaaactc
ctccgcgccatcttcggcgaaaaggcctcggacgtgcgcgacacctcgctgcgggtgaag
ccgggcgattacggcaccgtcgtggaagtccgcgtcttcaaccgtcacggcgtcgagaag
gacgaacgtgcgctgcagatcgagcgcgaagagatcgaaagcctcgcgcgcgaccgcgac
gacgagctggcgatcctcgaccgcaacatctacgcgcgtctgaagtccatgatcctcggc
aagaccgccgtgaagggccccaagggcgtgaaggcaaactcggaaatcaccgaggaattg
ctggacagcctgacccggagccagtggtggcaactcgccctcggtgaggaagaggaagcc
aagttcgtggaggccctgaacgagcagtacgaggcgcagaagcgcgcgctcgatgcccgg
ttcgacgacaaggtcgagaaggtgcgccgcggcgacgatctgcccccgggcgtgatgaag
atggtcaaggtcttcgtggcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaagggcgtcatctcgaaggtcgtgccgatcgaggacatgccgttcctt
gcggatggtactccggtcgacttctgcctcaacccgctcggcgtgccgagccggatgaac
gtgggtcagatcctcgagacgcatatgggctgggccgcgcgcggtctgggcatcaagatc
gacgatgccctgcaggattatcgccgcaccggcgacctgagccccgtgcgcgaggcgatg
cacacggcctatggcgacgacgtcttcgacgaaggcatcgcgtctatgtcggatgacgag
ctggtggccgcggcctccaacgtcacccgcggcgtgccgattgcgacgccggtcttcgac
ggcgcgaaggagcctgacgtcaacgatgcgctcaagcgcgcgggcttcgaccagtcgggt
cagtcgatcctgttcgacggccgcacgggcgagcaattcgcgcgtccggtgaccgtgggt
gtgaagtacctgctgaagctgcaccacctcgtggacgacaagatccacgcgcgctcgacc
gggccttacagcctcgtcacgcagcagccgctcggtggtaaggcacagttcggcggtcag
cgtttcggcgagatggaagtctgggcgctcgaagcctatggcgcggcctacaccctgcag
gaaatgctgacggtgaagtccgacgacgtggcaggccggaccaaggtctacgagagcatc
gtcaagggcgaggacaatttcgaggccggtgtgccggaatcgttcaacgttctcgtcaag
gaggtccggggtctgggcctcaacatggaactcctggatgcggaggaagacgaagagtaa
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