Roseivivax sp. THAF197b: FIV09_11905
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Entry
FIV09_11905 CDS
T06253
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rot
Roseivivax sp. THAF197b
Pathway
rot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV09_11905 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rot03019
]
FIV09_11905 (rhlE2)
Enzymes [BR:
rot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIV09_11905 (rhlE2)
Messenger RNA biogenesis [BR:
rot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIV09_11905 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_11
DUF4443
Motif
Other DBs
NCBI-ProteinID:
QFS83534
LinkDB
All DBs
Position
complement(2422151..2423437)
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AA seq
428 aa
AA seq
DB search
MFDFDMLGLAPALNTALLNNKLTQPTPIQNKAIPLALEGHDILGLAQTGTGKTLAFGLPL
IDHLLAAPGKPEPKQAKALILAPTRELVNQIADSLRSLTRETRIKVATVVGGQSINRQIS
TLSRGTDILVATPGRLIDLMDRRAVDLSSVRHLVLDEADQMLDMGFIHALRKIAPKLGTP
RQTMLFSATMPKQMEELSGAYLTNPRRVQVSPPGKAADKITQSVHYVEKGAKPGRLREIL
SQDPDALTLVFARTKHGAEKLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGTITILV
ATDVAARGIDIPGVAYVINYELPDVADNYVHRIGRTARAGREGEAIAFCAADEVELLEQI
EKVMKTEIPVGFGTRPKAEPRPKPGGGRRGGGGNRGGGNRGRGGKPQGAPKAQGSAPKKH
RPRRRKAA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgactttgacatgctcggcctcgcgccggccctcaacaccgcccttctgaacaac
aaactgacccaacccacgccgatccagaacaaggccattccgctggccctggaaggccat
gacatcctgggcctcgcccagaccggcaccggtaagacgctggccttcggcctgccgctc
atcgaccatctgctggcagcccccggcaagcccgagcccaagcaagccaaggcgctgatc
ttggcacccacgcgcgaactggtgaaccagatcgccgacagcctgcgcagcctgacgcgc
gagacccgcatcaaggtcgcgaccgtggtgggcgggcagtccatcaaccgccagatctcc
accctgtcgaggggcacggacattctggtggcgacgcccggacggctcatcgacctgatg
gatcgccgcgcggtggatctctcctccgtgcgccatctggtgctggatgaggcggaccaa
atgctcgacatgggcttcatccatgcgctgcggaagatcgcacccaagctcggcacgccg
cgtcagaccatgctgttctcggccacgatgccgaagcagatggaggagctgtcgggcgcc
tacctgaccaatccgcgccgcgtgcaggtctcccctccgggcaaggccgccgacaagatc
acccagtcggtgcattacgtcgagaagggcgcaaagcccggccgtctgcgcgagatcctg
tcgcaggaccccgacgcgctgacgctcgtcttcgcgcgcacgaagcacggcgccgagaag
ctgatgaagggtctcgtggcggatggcttcaacgccgcctcgatccacggcaacaagagc
cagggccagcgcgaccgcgcgatcaaggccttccgcgacggcacgatcaccatcctcgtg
gcgaccgatgtggccgcgcgcggcatcgacatcccaggtgtggcctacgtcatcaactac
gagctgccggatgtcgcggacaactacgtgcaccggatcggacgcaccgcgcgtgccgga
cgcgagggcgaggcgattgccttctgcgccgcggacgaggtggaactgctggagcagatc
gagaaggtcatgaagaccgagatcccggtgggcttcggcacccgcccgaaggccgaaccg
cgtcccaagccgggcggcgggcgtcgcggtggcggcggcaatcgcggcggtggcaaccgg
ggtcgcggcggcaaaccgcagggcgctcccaaggcgcagggtagcgcgccgaagaagcac
cgtccgcgccgacgcaaggcggcgtaa
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