Roseivivax sp. THAF197b: FIV09_13525
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Entry
FIV09_13525 CDS
T06253
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rot
Roseivivax sp. THAF197b
Pathway
rot02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FIV09_13525 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rot03021
]
FIV09_13525 (rpoD)
Transcription machinery [BR:
rot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FIV09_13525 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
DUF4168
PRCH
DUF1451
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
QFS83850
LinkDB
All DBs
Position
complement(2794116..2796125)
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AA seq
669 aa
AA seq
DB search
MAAKDNDDAKQDSPDDDVSFDMSQAAVKKMIAEARERGYITYDQLNEVLPQDQVSSDQIE
DVMSMLSEMGIQVTEHDEEAEEEEEQKGSTEVVDASKSRGDVAVSSGGSEKLDRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWREELLSEDILLR
DVIDLETTFSGQMGDDEDGVAEPVVDPTVAAAAPAAKTEKKDEPELDADGNPIRSNDDDE
DDDEQANMSLAAMEAALKPRVLETLDRIAQDYEQLAAMQDNRISATLNEDNSFSEGDETM
YQKLRSEIVELVNELHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADHARINRREFIDE
YRGYELDPNWLERMGEKQGRGWQTFIEKSTDKVEELRSDMAQVGQYVGLDISEFRRIVQQ
VQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELA
EKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDAAIQDNLKETT
TRVLSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRS
RKLRSFLDQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaacgacgacgccaagcaggacagcccggacgacgacgtctccttc
gacatgagccaggccgcggtcaagaagatgatcgcggaggcccgtgaacgcggctacatc
acatacgatcagctgaacgaggttctgccgcaggaccaggtgtcctcggaccagatcgaa
gacgtgatgtcgatgctttccgaaatgggcatccaggtcaccgaacatgacgaggaagcc
gaggaggaagaggagcagaagggctcgaccgaggtggtcgatgcctcgaaatcccgcggc
gatgtggcggtctcctccggcggcagcgagaagctggaccgcaccgacgatccggtgcgc
atgtacctgcgggagatgggctccgtcgagctgctgagccgcgagggcgaaatcgccatc
gccaagcggatcgaggccggccgcaacaccatgatcgcggggctctgcgaaagcccgctc
acattccaggccatcacgatctggcgcgaggaactcctctcagaggacattcttctgcgc
gacgtgatcgacctcgagacgaccttctcgggccagatgggcgacgacgaggatggcgtg
gccgagccggtggtcgacccgaccgtcgccgccgcggcacctgcggccaagaccgagaag
aaggacgagcccgagcttgacgcggacggcaacccgatccgcagcaatgacgacgacgag
gatgatgacgagcaggcgaacatgtcgcttgccgcgatggaggcggcgctgaagccccgc
gtcctcgaaacgctcgaccggatcgcgcaggattacgaacagcttgcggcgatgcaggac
aaccggatctcggccaccctgaacgaggacaattcgttctccgaaggcgacgagaccatg
tatcagaagctgcgctccgagatcgtcgaactggtcaacgagctgcacctgcacaacaac
cgcatcgaggcgctgatcgaccagctttacggcatcaaccgccggatcatgtcgatcgac
agctccatggtgaagctggcggaccacgcgcggatcaaccgccgcgagttcatcgacgaa
tatcgcggctacgagctcgatcccaactggctcgagcggatgggcgagaagcaaggccgc
ggctggcagaccttcatcgagaaatcgaccgacaaggtcgaagagttgcgctccgacatg
gcgcaggtcggccagtatgtcggtctcgacatctcggaattccgccgcatcgtgcagcag
gtccagaagggcgagaaggaagcccggcaggccaagaaggaaatggtcgaggcgaacctg
cgtctcgtgatttccatcgcgaagaagtacaccaatcgcggcctgcaattcctggatctc
atccaggagggcaatatcggcctgatgaaggccgtcgacaagttcgagtatcgccgcggc
tacaagttctcgacctatgcgacctggtggatccgtcaggcgatcacccgctccatcgcg
gatcaggcgcgcaccatccgtatcccggtgcacatgatcgagacgatcaacaagctggtg
cgcacgggccgccagatgctgcacgagatcggtcgcgaaccgacgcccgaagagctggcc
gagaagctgcagatgccgctcgagaaggttcgcaaggtgatgaagatcgccaaggagccg
atcagcctcgagacgcccatcggcgacgaggaagacagccagcttggcgatttcatcgag
gacaagaatgcggttctgccactcgatgcggccattcaggacaacctgaaggaaaccacg
acgcgggtcctgtcctcgcttaccccgcgcgaggagcgcgttctgcgcatgcgcttcggc
atcggcatgaacaccgatcacacgctcgaagaggtgggtcagcagttcagcgtgacgcgc
gaacgtatccgccagatcgaggcgaaggcgctgcgcaagctcaagcatccgtcacggtcg
cgcaagttgcggtcgttcctggatcagtag
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integrated database retrieval system
