Roseivivax sp. THAF197b: FIV09_17575
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Entry
FIV09_17575 CDS
T06253
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rot
Roseivivax sp. THAF197b
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rot03400
]
FIV09_17575
Enzymes [BR:
rot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIV09_17575
DNA repair and recombination proteins [BR:
rot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FIV09_17575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QFS84653
UniProt:
A0A5P8Z4W8
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All DBs
Position
3648175..3651138
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AA seq
987 aa
AA seq
DB search
MIFDDAQSPRLFALPPGADFPAALAAGLRARFAGHPAEAIARTELMVNTQRMKRRLELIF
AEAGSGFLPRITLVTDPADARLRARLPRPVPSLRRRLELTGLVSGLLDQAEGLAPRAALY
DLADSLAGLMDEMQIENVAPETIAALDVTDQSGHWERALQFLKIVQHYFDAAGPAPDAAA
LQRRAVEMRIADWQDNPPEHPVIVAGSTGSRGTTHALMLAVARLPQGAVILPGFDFDMPR
HVWDQLTDDLPRKDHTQPGEDHPQFRFARLLRDLGASPPDVADWGYGTAPAPARNALVSL
ALRPAPVTDQWLTEGPGLPDLSDATREVTLLEAPDPRREAVAIAMRLRAAAETGQSAALI
TPDRNLSRQVSAALDRWGIVADDSAGLPAQMSPPGRLMRQVAQLLHTPLTAETLLALLKH
PLCHAGDDPTEARSAHTRAVPKLETHIRRKGMPYPDPAQIGRWPEAEAHPDWTAWVAETL
CDKPDAATRPLSEWVATHIALSEAVVAGSAGHGAGALWDKEAGRELRRIMTELETEAPHG
TTLGARDYADLFGAILSRGEVRNPDTVHPHIRIWGTIEARVMGADLMILGGLNEGTWPEM
PKADPWLNRRMRADAGLTLPERRIGLSAHDFQQAVAAREVWLTRAVKSADADTVPSRWLN
RVTNLMKGLPERGGPDALDAMRRRGTDWLAQVHALERPILSAPARRPSPKPPASARPREL
RLTQVKTLIRDPYTIYARKVLRLEPLNPLMQAPDALLRGIVVHDALKAYGEVMRDHGVPP
TAASFLEAIERELARAVPFPLARQLWQARFARIAKSFADEEQARQSRAQLARFEIDGAAT
LPALGFTLKTRADRIDLDDRSGAHLYDYKTGKPPGEKEQLYFDKQLLLTAAMVEMGAFRE
FEPRHIADARFIGLGASGGEVSAPLEKAPPREVWAGLERLIARYLDESQGFTARRAMFSD
TDRSDFDHLSRLGEWDLADDPLAEVLE
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgacgacgcgcaatccccgcgccttttcgccctgcctccgggggcggatttt
ccggcagcgctcgcggccgggctacgcgcgcggttcgcgggtcaccctgccgaggcgatt
gcccgcaccgaattgatggtcaacacgcagcgcatgaagcgcaggctggagctcatattc
gccgaagccggttcgggctttctgccgcgcatcacgctggtcaccgaccctgccgatgcg
cgtcttcgcgcgcgcctgccgcgcccggtgccgtcgctgcgcaggcggctggaattgacg
ggtctcgtctcgggcctgctcgaccaggcggaggggctggcaccacgcgcggccctgtat
gacctcgccgacagccttgccgggctgatggacgagatgcagatcgagaacgtggcgccc
gagaccatcgccgcgctcgatgtcacggaccagtcgggccattgggagcgcgcgctgcaa
ttcctgaagatcgtgcagcattatttcgacgcagccggtccggcccccgatgcggcagcc
cttcagcgccgtgcggtcgagatgcggatcgcggattggcaggacaacccgcccgagcat
cccgtgatcgtcgcgggatccaccggctcgcgcgggaccacccatgcgttgatgctggcc
gttgcgcgtctgccccaaggcgcggtgatcctgcccggcttcgatttcgacatgccgcgt
catgtctgggaccagctgaccgatgatctgccgcgcaaggatcacacccagcccggcgag
gatcatccgcaattccgcttcgcgcggctgctgcgcgatctcggcgcaagcccgcccgac
gtggccgattggggatatggcaccgccccggcgcccgccagaaacgcgctcgtgtcgctg
gccctgcggcctgcgcccgtgaccgaccaatggttgaccgaagggcccggcctgccggat
ctcagcgatgcaacgcgggaggtgaccctgctcgaggcgcccgatccgcgtcgcgaagcc
gtcgccatcgccatgcgtctgcgtgccgctgccgagaccgggcaaagcgccgcgctgatc
acgcccgacaggaacctctcgcggcaagtgtcggccgcgctggatcgatgggggatcgtg
gcggacgattccgccggtctgcccgcgcagatgtcaccgccgggacgcctcatgcggcag
gtcgcgcagcttctgcacacgccgctgaccgccgaaacgctgcttgcgctgctcaagcat
ccgctctgccatgcgggcgacgacccgaccgaggcacgcagcgcccatacccgcgccgtg
cccaagctcgagacgcatattcggcgcaagggcatgccctatccggaccctgcccagatc
gggcgctggcccgaggccgaggcgcatcctgactggacggcttgggtcgcggagacgctc
tgcgacaagcccgacgccgcaacccggcccctctccgagtgggtcgccacgcatatcgcg
ctgagcgaagccgtggtcgcgggcagcgccgggcatggcgccggtgcgctttgggacaag
gaggcgggccgcgaattgcgccgcatcatgacggagctggaaaccgaagcgccccatggc
accacgctcggcgcgcgcgactatgccgaccttttcggtgcgatcctgtcccggggcgaa
gtgcgcaaccccgacacggtccatccgcatattcgcatttggggcacgatcgaggcgcgg
gtcatgggggccgatctgatgatcctgggcggcctcaatgaaggcacttggcccgagatg
cccaaggccgatccctggctcaatcgccggatgcgcgccgatgcggggctgaccttgccg
gaacgccggatcgggctttcggcccatgacttccaacaggcggtcgccgcgcgcgaggtc
tggctgacccgtgccgtcaaatccgccgatgccgataccgtgccgtcgcggtggctgaac
cgggtcacgaacctgatgaagggcctgcccgagcggggcgggccggatgcgcttgatgcg
atgcgacggcgcggcacggactggctggcacaggtccacgcattggagcgccccatcctg
tccgcgcccgcgcgccgtccctcgccgaagccgcccgcatcggcccgaccacgcgaattg
cgtctgacgcaggtgaagacgctgatccgcgacccgtacacgatctatgcgcgcaaggtc
ctgcggcttgagccgctcaatccgctgatgcaggcgcccgacgcgcttctgcgcggcatc
gtcgtgcatgacgcgctgaaggcctatggcgaagtgatgcgcgaccacggcgtcccgccc
acggcggcgtcgttccttgaggcgatcgagcgcgagcttgcccgcgccgtgccgttcccg
ctggcacgacagctctggcaggcgcgcttcgcccgcatcgccaagagcttcgccgacgag
gagcaggcccggcaaagccgggcgcagcttgcgcgcttcgagatcgacggcgcggcaacc
ctgcccgcgctcggtttcacgctgaaaacccgcgccgaccgtatcgacctcgatgatcgc
agcggcgcgcatctttacgattacaagaccggcaaaccgcccggcgagaaggagcagctc
tatttcgacaagcagctgctgctcaccgccgccatggtggagatgggcgcgttccgggag
ttcgagccgcgccatatcgcagatgcgcggttcatcgggctcggcgcgtcgggcggcgaa
gtctccgccccgctcgagaaggccccgccgcgcgaggtctgggccgggttggagcgcctg
atcgcccgctatctcgacgaaagccagggcttcaccgcgcggcgcgctatgttcagcgac
accgatcgcagcgatttcgaccacctgtcgcgcctgggcgaatgggaccttgccgacgat
ccactggcggaggtgctggaatga
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