Rouxiella sp. WC2420: AB3G37_02625
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Entry
AB3G37_02625 CDS
T11448
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rou Rouxiella sp. WC2420
Pathway
rou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3G37_02625 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rou03019
]
AB3G37_02625 (rnr)
03016 Transfer RNA biogenesis [BR:
rou03016
]
AB3G37_02625 (rnr)
Enzymes [BR:
rou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB3G37_02625 (rnr)
Messenger RNA biogenesis [BR:
rou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3G37_02625 (rnr)
Transfer RNA biogenesis [BR:
rou03016
]
Prokaryotic type
tRNA degradation factors
AB3G37_02625 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XDU73032
UniProt:
A0AB39VTN6
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Position
534534..537092
Genome browser
AA seq
852 aa
AA seq
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MSQDPFLEREAEKYESPIPSREFILEHLGKRETPASREELGNELNLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRLEGVKKDDVYLSAEQMKMCI
HGDVVLAQPVGTDRKGRREARIVRVVVPKVSQIVGRYFTDAGAGFVVPDDSRLSFDILIP
ADGVNGARMGYMVVVELTQRPTRRTKAVGKIVEVLGDKMGTSMAVDIALRTHEIPHVWPP
QVEKQVAGLSEQVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEAKRGGGWRLWVAI
ADVSYYVRPGTALDDEARSRATSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SATGKLTTSKFYEAVMSSHARLTYTKVWHIIEGNPELREQYAPLVKHLEELHKMYKVLDQ
ARAERGGIAFETEEAKFIFNAERRIERVEATVRNDAHKLIEECMIMANIAAARFVEKHNE
PALFRVHDRPSDDHISALRSVLGELSLTMGGGLKPEPKDYADIMDQLKDRPDREMLQTML
LRSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLALHRAIKYVLAKEHGNLKDRWTP
TGGYHSDYEDMVVLGDHCSTAERRADEATRNVADWLKCDFMQDHVGEVFNGIISSVTGFG
FFVRLADLFIDGLVHVSSLDNDYYRYDNIGQRLVGESSGSVYRLGDAVEIRVEAVHMDER
KIDFALVSSTRKPRGEGKTARDRAKKGERAMRPAGAANSGRRRSVKKNVNFEPDSAFRKD
GDKTAKPAKAKRAGRAETAKAAVKPEAAKAGKVVSAVGKDGKPKKVKKPSDKTQKIAAAT
KAKRAKKKQIES
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcgcctatccctagc
cgtgaatttattctcgaacatcttggtaaacgcgaaacgcctgccagccgcgaagagctg
ggcaatgaactgaatctttctggtgaagagcagcttgaagcgctgcgtcgtcgactgcgc
gccatggagcgtgatggtcagttagtatttacacgtcgtcagtgctatgcgctgccggag
cgtctggatttgctgaaaggcaccgttattggccatcgcgatggttatggcttcctgcgc
cttgaaggcgtgaaaaaagacgacgtttatctctctgccgagcagatgaaaatgtgtatc
cacggtgacgtggtgctggctcagccggttggtactgaccgtaaaggtcgccgcgaagcg
cgcattgttcgcgttgtggtgcctaaggtcagccagatagtcggtcgttacttcactgac
gccggtgcaggttttgtggtgccggacgacagccgtctcagctttgacatcctgatcccg
gcagacggcgttaacggcgcgcgcatgggctacatggtggtcgtcgagctgactcagcgc
ccgacgcgccgtaccaaggccgtgggtaaaatcgttgaagtactcggcgataaaatggga
accagcatggcggtagatatcgcgctgcgcacccatgaaattcctcacgtctggccacca
caggttgaaaaacaggtcgcaggcctgagtgagcaagttcccgaagaagccaaaaaaggt
cgcgttgacctgcgtaatctgccgctggtcactatcgacggtgaagatgcgcgagacttc
gatgatgcagtttactgcgaagccaagcgcggtggcggctggcgcctgtgggttgctatt
gccgacgtgagttattacgtgcgtcctggcactgcgctggacgatgaagcccgcagccgc
gcaacttccgtttacttcccgtcgcaggttgttccgatgctgcctgaagtgctgtcgaac
ggcctttgctcgctgaatcctcaggttgaccgcctgtgtatggtctgtgaaatgaccatt
tcagccaccggtaagctgaccacttccaagttctacgaagcggtgatgagctcgcatgcg
cgtctgacctataccaaagtctggcatattatcgaaggtaacccagagctgcgcgagcag
tatgccccgttggtcaagcatcttgaagagctgcacaagatgtacaaagtgctcgatcag
gcgcgtgccgaacgcggcggtattgccttcgaaaccgaagaagccaagtttatctttaac
gccgagcgtcgcattgaacgcgtagaagctaccgttcgtaacgacgcgcacaagctgatt
gaagaatgtatgatcatggcgaacatcgccgcggcgcgttttgttgaaaaacataacgaa
ccggcgctgttccgcgtgcatgaccgcccaagcgatgaccatatttccgcgctgagaagc
gtgctgggcgagctgagtttgaccatgggcggcggtctcaagcctgagccgaaagactat
gccgatatcatggaccagctgaaagatcgccccgatcgcgagatgctgcaaaccatgctg
ctgcgctcgatgaagcaggcggtttacgatccggaaaaccgtgggcactttggtctggca
ctcacctcgtacgggcactttacttcaccaatccgtcgttatcccgacctggcattgcat
cgcgcaattaaatatgtgctggcgaaagaacacggtaatctcaaggatcgctggacgcca
accggcggttaccacagcgattacgaagatatggtggtgttgggcgatcactgttctacc
gcagaacgtcgcgccgatgaagccacgcgtaatgttgccgactggctgaaatgtgacttc
atgcaggatcacgtcggcgaagtgtttaacgggattatctccagcgtcaccggctttggt
ttcttcgtccgcctggctgacctgtttattgacggtctggtgcacgtttcatcgctcgat
aacgactactatcgctacgataatattggtcagcgtctggtgggcgagtcttcgggaagt
gtttaccgcctcggtgatgcggtagaaattcgcgtggaagcggtacacatggacgagcgt
aaaatcgattttgctctggtttccagcactcgcaaaccgcgtggtgaaggcaaaactgct
cgcgatcgtgccaaaaaaggcgagcgcgcaatgcgcccagccggtgctgccaattcgggg
cgtcgtcgttcagtgaaaaagaacgtaaactttgagccggacagcgcatttcgtaaagac
ggcgataaaactgccaaaccagcgaaagccaaaagggcgggtagagctgaaactgccaag
gccgcagtgaagccagaagcggcgaaggccggtaaagttgtcagcgctgtgggcaaggac
ggcaaacccaagaaagttaaaaagccttccgataaaacgcagaagattgcggcagccacc
aaggccaagcgagcgaagaaaaagcagattgaatcctaa
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