Rahnella sikkimica: BV494_00290
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Entry
BV494_00290 CDS
T05331
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
rox
Rahnella sikkimica
Pathway
rox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BV494_00290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_00290
Enzymes [BR:
rox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BV494_00290
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BV494_00290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AVF37311
UniProt:
A0A2L1UWN6
LinkDB
All DBs
Position
55197..58646
Genome browser
AA seq
1149 aa
AA seq
DB search
MVLHGNHSEALRDILVSWMAAHPLSPLENEVILVQSNGINQWLKLALARDVSEGGCGIAA
ALDIKLPARFFWQVYRAVLGKDQVPDSSPFDRSLLTWRLIRLLPQLLPEPVFAPLARFLK
DDGDMRKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPVPENLLWQPQL
WRALLDDVPESERGTSRAALHQRFLQHAQTIPEDQRPAGLPARLIVFGISSLPQQSLEVL
AVLGRWTHIFMCVHNPCEHDWSDIIADKDLLRAERARQQRKPGMPQVIAEGDLHQHAHPL
LAAWGKQGRDYIGLLNEYDNHESYASTLAPVIPRIDLFTSNGEDTLLHQLQEDILQLRPL
AETKDKWPEIDALKDPSLRFSITHSAQREVEVLHDRLLAALAADPTLKARDIIVMVPDIN
GYAPHIQAVFGLMERSDPRYIPFTVADQGPRQNNPLLGALESLLTLPQSRFAVSDLLDLL
DVPSVRQRFGIGEEQLPLLHRWISAANVRWGLHAEQRQSLGLPLSPEQNSWFFGLQRMLL
GYAVGSGDAWQGIEPLDEIGGLEAALIGPLSHLLNCLDETWRQLCEPASPQVWGERLQAL
LSGYFAEDDGDDGFILVRLHTELETWLEACESVDLQAELPLSVVREHWLAQFDQSGLTQP
FFGGAVTFATLMPMRAIPFRHVYLLGMNDGDYPRHRVPMDFDLMGRDYRPGDRSRREDDR
YLFLEALLSARERLHISWVGRSILDNTGRPPSVLVAQLRDHLAAGWKAQNGGDLVHAIST
EHRLQPFNRDYFSKGSELFSYAHEWRAGMDADITAEAPQPLPPVEQEGALTLRQLADFLS
DPVRSFFRQRLNIYFELEDAGSEDQEPFDINALENWRLQDELIRAQKWALEAGESRQDIL
RQQLERIERRGELAPGEFAAVLSEDLAEPMETLFASYQSVLDEWPQTLANEALSVESAGV
NVSDWLGDLRANASGDRARVVLESIGIMTKERSYRFDRLLPYWVAHLAGHLGGQPMHSII
ISKNGTAELPPLEINEAQALWQQLIETWQQGQLRPLPLAVKTAFVWLKKDGTAQSPPDSD
AGLAARDTYENHDPANMKFGERDSNPYLARAWPDFATLWSGGEFAELADKLLAPLKNHLS
RSSKKGAKE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggtgttacacggaaatcactcagaagcgctgagggatattctggtgtcgtggatggcg
gcgcatccgctgtctccgctggaaaacgaagtgattctggtacaaagcaacgggatcaat
cagtggctgaaactggcgctggcgcgcgatgtgtccgaaggcggctgcgggatcgcggcg
gcgctggacatcaaactgcctgcgcgctttttctggcaggtttaccgcgcggtgctgggc
aaagaccaggtgccggattcgtcgccgtttgaccgctcgctgctgacctggcggctgatc
cgtctgttgccgcaattactgcctgaacctgtttttgctccgctggcgcgtttcttaaaa
gatgacggcgatatgcgtaagctgcatcagctggcgcagcgtctggcggatttgttcgat
cagtatcaggtataccgcgccgactggctcgaagactggggcaacgggctggacgtgttg
cgcaccagccgtaaaggcagcgagccggtgccggaaaacctgctgtggcagccgcaattg
tggcgcgcactgctggacgatgtgcctgaaagcgagcggggaaccagccgcgccgcactg
catcagcgttttctgcaacatgctcaaactattcctgaagaccagcgtccggccggtttg
cctgcgcggctgatcgtcttcggcatttcgtcgctgccgcaacaatccttagaagttctg
gctgtgctcggccgctggacgcacatctttatgtgtgtccataacccgtgcgagcacgac
tggagcgatattatcgccgataaagatcttctgcgcgccgaacgtgcgcgtcagcagcgc
aaaccgggcatgccgcaggtgattgccgaaggcgatttgcatcagcacgcgcatccgctg
ctggcggcgtggggcaaacaggggcgcgattacatcggcctgctcaatgaatatgacaat
cacgagtcctacgcttccacgctcgcgccggtgatcccgcgtattgatctgttcacctcc
aacggcgaagacaccttattgcatcagttgcaggaagacattctgcaactgcggccgctg
gcggaaacgaaagacaaatggcctgagattgatgcgctgaaagacccatccctgcgtttt
tcgataacgcacagcgcccagcgtgaagtggaagtgctgcacgaccgtctgctggccgcg
ctggccgccgatccgacgctgaaagcgcgcgatattatcgtgatggtgccggacattaat
ggctatgcgccgcacattcaggcggtgtttggcctgatggaacgcagcgatccgcgctat
atcccgttcaccgtggccgatcaggggccgcgtcagaacaacccgttgctcggtgcgctt
gaaagcctgctgacgttgccgcagtcgcgttttgccgtcagcgatttgctggatttactc
gatgtgccgtcggtgcgtcagcgttttggcatcggtgaagagcagttgccgctgctgcac
cgctggataagcgccgccaacgtgcgctgggggctgcatgcggaacagcgtcagagcctc
gggttgccgttatcgccggagcaaaacagctggttcttcggcctgcaaagaatgctgctc
ggttacgccgttggcagcggtgacgcctggcagggcattgaaccgctggacgaaatcggc
gggctggaagcagcgctgattggcccgctgtcgcatctcttaaattgccttgatgaaacc
tggcgtcagctgtgtgaacccgcgtcgccacaggtgtggggcgaacgtttacaggcgttg
ctcagcgggtattttgccgaagatgacggcgacgacggttttattttagtgcgtctgcat
accgagctggaaacctggcttgaagcctgtgaaagcgtcgatcttcaggccgagctgccg
ctgtctgttgtgcgcgaacactggctggcgcagtttgatcagtccggcctgacgcagccg
ttctttggcggtgccgtcacgtttgccacgctgatgccgatgcgcgccattccgttccgc
catgtttacctgctcggaatgaatgacggcgattatccgcgccaccgcgtgccgatggat
ttcgacctgatggggcgtgattaccggccgggcgaccgttcgcgccgtgaagatgaccgt
tatctgttcctcgaagcgttgctgtcggcgcgcgaacgcctgcatatcagctgggtcggg
cgcagcattctcgataataccgggcgtccgccgtcggtgctggtggcgcaactgcgcgac
catctggcagcgggctggaaagcgcagaacggcggcgacctggttcacgcgatcagcacc
gagcatcgcctgcaaccgtttaaccgcgattacttcagcaagggcagcgagcttttcagc
tacgcccacgaatggcgcgccggaatggacgcggatatcaccgctgaagcgccgcagccg
ttgccgccggtggagcaggaaggggcgctgacgctgcgtcagctggcggatttcctgtcc
gatccggtgcgcagtttcttccgccagcggctgaatatttacttcgagctggaagatgcg
ggaagtgaagatcaggagccgtttgatatcaatgcgctggagaactggcgtttgcaggat
gaactgatccgcgcgcagaaatgggcgctggaggccggagagtcgcgtcaggatattttg
cgtcagcagcttgaacgcatcgaacggcgcggtgaactggcaccgggcgaatttgccgcc
gtgctgagtgaagatctcgccgagccgatggaaacgctgttcgccagttatcagagcgtg
cttgatgaatggccgcagacgctggcgaatgaagcgctgagtgttgaaagcgcaggcgtg
aatgtctcggactggctgggcgatttacgcgctaacgccagcggggatcgcgcccgcgtg
gtgctggaaagtatcggcatcatgaccaaagaacgcagttaccgctttgaccgtttgctc
ccttactgggtcgcacatctggccggacacctcggcggacagccgatgcacagcatcatt
atcagtaaaaacggcacggcagaattaccgccgctggagattaatgaggcgcaggcgctc
tggcagcaactgatcgaaacctggcagcagggacaattacggccgttaccgctggcggtc
aaaacagcctttgtctggctgaaaaaagacggcaccgcgcaaagtccgccggacagcgat
gccgggcttgcggcccgcgatacctatgaaaatcacgatccggctaacatgaaatttggt
gaacgcgacagcaacccgtatctggcgcgcgcgtggccggatttcgccacgctctggtcc
ggcggcgaattcgctgaactggctgacaaattgctggcaccgctgaaaaatcatctttcc
cgcagcagcaaaaaaggagcgaaagaatga
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