Rahnella sikkimica: BV494_03515
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Entry
BV494_03515 CDS
T05331
Name
(GenBank) LysR family transcriptional regulator
KO
K16516
LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
Organism
rox
Rahnella sikkimica
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rox03000
]
BV494_03515
Transcription factors [BR:
rox03000
]
Prokaryotic type
Helix-turn-helix
LysR family
BV494_03515
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GFIT
Motif
Pfam:
HTH_1
LysR_substrate
MarR_2
TP6A_N
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AVF34060
UniProt:
A0A2L1UM92
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Position
795773..796987
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AA seq
404 aa
AA seq
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MAQDEMLSNLMQIRAFCQVVDQGSVSRAADELYRTQSAVTRAIRDLEQTLDVPLFERHAN
GMLLTDFGKCVLPRARRAIAELRLIPSQLAKLQGKAGQTRSETEPLYLFNVRRLQIFISL
CKTRHMQTVATLLGLSQPAVSSALKVLENGAGLALLARTPHGMMPSLAGQDIVPNLRRAL
NELRHIPADIAARRGVLEGSVQVGALPLGRTRLLPQAIIGLTQRYGGVKVITNESAFSAL
ASELRSGEVDFIFGALRSSDYAADMVTETLFTESMVILARKGHPLLNAPVTQAQLRVARW
VLPRADTPSRRLLDNSFHAMDMPPPDPVVESGDLGIVRGLLLGSDMLAAVSARQLEHELE
SGELVRLPLELADTHRAIGLTFRAGSLLSPAAQALVEEIRRVCG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagacgagatgctgagtaacctgatgcaaatacgtgctttttgtcaggtggtc
gatcagggaagcgtatcgcgcgcagccgacgagctttaccgcacgcagtcggcggtgacg
cgggcgatacgcgacctggaacagacgctcgacgtgcctttgtttgagcgtcatgccaac
ggcatgttgctgaccgatttcggtaaatgcgtgctgccgcgtgcgcggcgcgcgattgcc
gaattacgcctgatcccgtcacagctggcgaaattgcagggcaaggcggggcagacgcgc
agcgaaaccgagccgctttatctgtttaacgtccgtcgcctgcaaatatttatttcgctg
tgcaaaacgcggcatatgcagacggtcgccacgttgctcgggctgagtcagccagcggtc
agttcggcgttaaaagtgctggaaaacggggcgggtctggcgcttctggcacgcacacca
cacggcatgatgccgtcgctggccgggcaggatatcgtgccgaatttgcgccgtgcgctg
aatgaactgcggcatattccggcggatatcgccgcccgtcgtggcgtgctggaaggctcg
gtgcaggtcggcgcattgccgctgggtcgaacgcgtttgctgccgcaggcgatcatcggg
ctgacacagcggtatggcggcgtaaaagtcattaccaatgaaagtgcgttcagcgcgctg
gcgtccgaactgcgttccggcgaggtggattttatcttcggcgcactgcgttccagtgat
tacgcggcagatatggtgacggaaacgctgttcaccgaaagcatggtgatactggcgaga
aaagggcatccgctgctgaatgcaccggtgacgcaggcgcagttgcgcgtggcgcgctgg
gttttgccgcgcgcagacacgccgtcgcgacggttgctggataacagttttcacgcgatg
gatatgccgccgccggatccggtggtggaaagcggcgatctggggattgtgcgcgggctt
ctgctgggatcggatatgctggcggccgtttctgcccgccagcttgagcacgaactggaa
agcggcgaactggtcagactgccgctggaactggccgacacgcaccgcgccatcggcctg
accttccgcgccggaagcctgctttcccccgccgcacaggcgctggtggaggaaatccgg
cgggtgtgcggttag
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