Rahnella sikkimica: BV494_03810
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Entry
BV494_03810 CDS
T05331
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rox
Rahnella sikkimica
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rox03032
]
BV494_03810
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_03810
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BV494_03810
DNA replication proteins [BR:
rox03032
]
Prokaryotic type
DNA Topoisomerases
BV494_03810
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BV494_03810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
Motif
Other DBs
NCBI-ProteinID:
AVF34116
UniProt:
A0A2L1UMF4
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All DBs
Position
857914..860511
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKTADSTEEKTKKKVK
KDEKTALVNRMGVDPYHGWEAQYEILPGKEKVVAELKALAEKADHIYLATDLDREGEAIA
WHLREVIGGDEKRFSRVVFNEITKNAIQNAFKEPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLLAKKETALQMEVTH
HLDKPFKPVNKEQTHAAVSLLEKARYQVVDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVEMVRGYIGTNFGDKYLPKAPLQYSNKEN
SQEAHEAIRPSDVAVVSEQLKDMEADAQRLYQLIWRQFVACQMTPAQYDSSTLTVKAGDY
SLRAKGRTLRFDGWTKVMPALRKGDEDRILPAIEVGTDLQLQQLLPTQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVHVENRRFYAEKMGEIVTDRLEQNFRELMNY
DFTARMEDGLDQVANNKAEWKAVLDEFFAEFSKQLETAEKDPEEGGMRPNQMVLTSIECP
TCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLIADAEVLNILEGDEAEANALRAKR
RCGKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMGCTNDECKNTRKILRNGDVAPPKEDPVPLPELQCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELKRFKDRLPEKLSYLADAPVADPEGNKSMVRFSRKTKQQYV
SSEKDGKATGWTAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatcgttgagtccccggcaaaagccaaaacgattaataaatat
ttaggaaatgactacgtggttaagtccagcgtcggtcatatccgtgatttaccgaccagt
ggatccgctgctaaaaagaccgccgactcaaccgaagaaaaaacaaagaaaaaagtaaaa
aaggatgagaaaaccgcgctggttaatcgcatgggcgtcgatccgtatcatggttgggaa
gcacaatacgaaatacttcccggtaaagaaaaagtggttgctgagttaaaagcgttagcg
gaaaaagctgaccatatctatctcgcaaccgaccttgaccgcgaaggagaggcgattgcc
tggcatttgcgggaagtgattggcggtgatgaaaaacgtttcagccgcgtcgtatttaac
gaaattaccaagaacgcgattcagaatgcgtttaaagaaccgggcgagctgaatatcgat
cgtgttaatgctcagcaggcgcgtcgctttatggaccgtgtggtgggttacatggtttcc
ccactgttatggaagaaaattgcccggggtttatccgcgggccgtgttcagtccgtagcg
gtgcgtctggtggtcgaacgcgaaaaagaaatcaaagcgttcgtgccggaagaatactgg
gagctgcacgctgatttgctggcgaagaaagaaaccgccctgcaaatggaagtgacgcat
cacctcgataaaccgttcaagccggtcaataaagagcaaacccatgcggcagtttcgttg
cttgaaaaagcgcgttaccaggtggtggatcgtgaagataaaccgaccagcagcaaaccg
ggcgcgccttttattacctccacgttgcagcaggcggcaagtacccgtctgagctttggc
gtgaagaaaaccatgatgatggcgcagcgtctctacgaagccggtcacatcacctacatg
cgtactgactccaccaacctgagccaggacgccgtagaaatggttcgcggctacatcggc
acaaactttggcgataaatacctgccgaaagcgccgttgcagtacagcaacaaagaaaac
tcgcaggaagcacacgaagcgatccgtccttctgacgttgccgtagtctctgagcaactc
aaagatatggaagcggatgcgcagcgtctgtaccagctgatctggcgccagtttgtggcc
tgccagatgacaccggcgcaatacgactcttccacgctgacggtaaaagcgggcgattat
tccctgcgcgccaaaggccgtactttgcgtttcgacggttggacgaaagtcatgcctgcg
ctgcgtaagggcgacgaagaccgtatcctgcctgccattgaagtgggtaccgatcttcaa
ttacaacagttgctgcctacccagcacttcaccaaaccgcctgcgcgttttagcgaagcg
tccctggtgaaagagctggaaaaacgtggcattggccgtccgtccacttatgcgtcgatc
atttcgaccattcaggatcgtggctatgtacacgttgaaaaccgccgtttctatgcggaa
aaaatgggtgaaatcgtcacagaccgtctggagcaaaacttccgcgaactgatgaattac
gacttcaccgcccgcatggaagacgggctggatcaggtcgcgaataacaaagcggaatgg
aaagcggttctggatgaattcttcgccgaattcagcaaacagttggaaaccgctgagaaa
gaccctgaagaaggcggtatgcgcccgaatcagatggtactgaccagtatcgaatgcccg
acgtgcagccgtccgatgggtatccgtaccgccagtaccggtgtgttcctcggatgttcc
ggttatgcgttaccgccgaaagagcgctgcaaaaccaccatcaacctgattgcggatgct
gaagttctcaacatccttgaaggtgatgaagcggaagccaatgcgctgcgtgctaaacgt
cgttgcggcaaatgtggtacggcgatggacagctatctcatcgacaaccagcgcaaattg
catgtctgcggtaacaacccggaatgtgatggctacgaaatcgaagaaggcgaattccgt
atcaagggttatgacggcccgatcgttgagtgcgagaaatgtggttctgagatgcacctg
aaaatggggcgcttcggcaagtacatgggatgtaccaacgacgagtgtaaaaatacccgt
aagatcctgcgtaacggtgacgttgcgccgccgaaagaagatccggttccgttgccggag
ctgcagtgtgaaaaatctgacgcctatttcgttttacgcgacggcgcggcgggtgttttc
ctggcggccaatactttccctaaatcgcgcgaaacccgtgcgccgctggtggaagaactg
aagcgcttcaaagatcgtctgccggaaaaactgagctatctggccgatgcgccagtcgct
gacccggaaggcaataaatcgatggtgcgtttcagccgtaaaacgaagcagcagtatgtg
tcttcggaaaaagacggcaaagccactggctggacggcgttctttgtcgatggcaaatgg
gtcgaaggcaagaagtag
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