Rahnella sikkimica: BV494_04445
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Entry
BV494_04445 CDS
T05331
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rox
Rahnella sikkimica
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rox03016
]
BV494_04445
Enzymes [BR:
rox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BV494_04445
Transfer RNA biogenesis [BR:
rox03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BV494_04445
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF4019
Motif
Other DBs
NCBI-ProteinID:
AVF34227
UniProt:
A0A2L1UMQ8
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All DBs
Position
1000567..1001688
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AA seq
373 aa
AA seq
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MNYQLITTNDALEQVCLQAKAHSKIALDTEFVRTRTYYPQLGLIQLFDGERLTLIDPLPI
TAWQPFIDLLVNPDVVKFIHAGSEDLEVFLNAFGVMPAPLIDTQILAAFSGRPLSCGFAR
LVAETTGVELDKSESRTDWIARPLSEKQCVYAAADVWYLLPLADQLMRETEEAGWMEAAK
DECLALCRRRKEVLQPELAYLEIGNAFQLRPRQLGCLKLLAAWRLNQARQRDLAVNFVVR
EENLWQVARYQPKSLGELEALGLSGPEIRYHGRTLLALVEESEALAEDDLPAPILNLIDQ
PGYRKAFKDIKALIQTVSEESRLSVELLASRRQINQLLSRHWKLKEKESQPELISGWRGK
LLAERLNEILSQY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacgaccaatgacgcgctggagcaggtttgccttcaggccaaa
gcgcacagcaaaatcgcgctggataccgaattcgtccgcacccgcacttattacccgcaa
ctcgggctcatccagttgtttgacggtgaacggctgacgctgattgatccgctgccgatt
accgcctggcagccttttatcgatttgctggtcaaccctgatgtcgtgaaatttatccat
gcgggcagcgaagatctggaagtttttctcaatgcttttggcgtgatgcctgctccgctg
attgatacgcaaattcttgccgccttcagcggacgtccgctgtcttgcggtttcgcccgt
ctggtggctgaaacgaccggcgttgagctggataaaagcgaatcgcgcaccgactggatt
gcccgtcctctgagtgaaaagcagtgtgtctacgccgccgcagatgtctggtatctcttg
ccgctggccgatcagctgatgcgtgaaaccgaagaagccggatggatggaggccgcgaag
gacgaatgtctggcgttgtgccgccgtcgtaaagaagttctgcaaccggaactggcttat
cttgagattggcaatgccttccagctgcgtccgcgtcagttgggctgtctgaagttactg
gccgcgtggcgacttaatcaggcccgtcagcgagacctggccgttaactttgtggtgcgt
gaagaaaacctctggcaggtggcacgttatcagcctaaatcgctgggtgaactggaagcc
cttggcctgagcggcccggaaatccgttaccacggccggacgttgctggcgctggttgaa
gagtcagaggcgctggcagaagacgatttaccggcacctatcttgaatctgattgatcag
ccgggttaccgcaaagccttcaaagacatcaaggcgctgatccagaccgtgagcgaagag
agcagattaagtgtcgagttactggcgtcgcgccgccagattaatcagttattgagccgt
cactggaagttaaaagagaaagaatcgcagccggaattaatcagcggctggagaggaaaa
cttctggctgaaaggctgaacgaaattctcagccaatattga
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