Rahnella sikkimica: BV494_09610
Help
Entry
BV494_09610 CDS
T05331
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rox
Rahnella sikkimica
Pathway
rox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BV494_09610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_09610
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV494_09610
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BV494_09610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVF35174
UniProt:
A0A2L1UQG9
LinkDB
All DBs
Position
2110871..2114314
Genome browser
AA seq
1147 aa
AA seq
DB search
MSQDYRYSLPERPGDTRQLGQLTGSACALECAQISERHAGPILLIAPDMQNALRLRDEIQ
QFTDHKVLSISDWETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPH
EFLHGHALVMKKGQQLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDEIDSLRIFDVDTQRTLTEVDHINLLPAHEFPTDKNAIELFRSQWREKFEVRRD
AEHVYQQVSKGTFPAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDTC
QRYESRRVDPMRPLLEPENLWLRVDALHAELKAWPRVQLRTDSLPKKAANTNLSYEKLPD
LSVQPQNKAPMDNLRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEDAET
TGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDNRRSINTDTLIRNLAELRPG
QPVVHVEHGVGRYLGLTTLETGGITAEYLVLTYAGEDKLYVPVSSLHLISRYAGGADESA
PLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKTGFAFKHDKEQYQLFCQAFPFE
TTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTL
LAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLADAVEGKVDIIIGTHKLLQTDLRW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVIREAILREILRGGQVYYLFNDVENIEKATQRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFIPDV
NTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDAARNLLQIAVLRLNAKTLGIKRIEG
NERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFMLDLTDRPKRLKFVGDMLG
EFAEHLI
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagattatcgttattcgctgcctgaacgcccgggcgatacccgccagttaggg
cagcttaccggctccgcctgcgcgcttgaatgcgcccaaatcagcgaacgccacgcgggc
ccgatcctgctgattgcgccggatatgcaaaatgccctgcgcctgcgcgatgaaattcaa
caatttaccgatcataaagtcctgagtatttcggactgggaaacgctgccttacgacagt
ttctcgccgcatcaggaaatcatttcgtcgcgtctttccagcttgtaccagcttccgact
atggaacgcggcattatcattctgccggtgaatacgctgatgcagcgggtttgtccgcat
gaattcctgcacggccatgcgctggtcatgaaaaaaggccagcagctttcgcgcgataaa
ctgcggtcacagctggaacaggccggttaccgcagcgtcgatcaggtgatggaacacggt
gaatttgccacccgtggtgccctgctcgacttgtacccgatgggcagcgaagagccgtac
cgcatcgatttcttcgacgatgaaatcgacagcctgcgcatttttgacgtggacacgcag
cgcacgctgacggaagtcgaccacattaatctgctgcccgcgcacgaattcccgaccgac
aaaaatgccatcgaactgttccgcagccagtggcgcgagaaattcgaggtgcgtcgcgac
gccgagcacgtttaccagcaggtcagcaaaggcacgttccctgcgggtatcgaatactgg
cagccgctgtttttcagccagccgctgaccacgctgttcagctatttgccggaaaacacg
ctggtgctcaataccggcgatctggaagccgcagccgagcgtttctggcaggatacctgc
cagcgttacgaaagccgtcgcgtggatccgatgcgtccgctgctcgaaccggaaaatctc
tggttgcgcgttgatgcgctgcacgccgaactcaaagcctggccgcgcgtccagttgcgt
accgattcgctgccgaagaaagccgccaacaccaacctgagctacgaaaaactgccagat
ttatccgttcagccgcaaaacaaagcgccgatggataacctgcgccggttcaatgaatcg
ttcgcgggcagtctggtgttctcggtggaaagtgaaggccgccgcgaaacgctgcaagat
ttactggcacgcatcaagctgatgccgacgctgattacccgcattgaagacgccgaaacc
accggtcgctacatcatgatcggggcgtgtgaacgcggttttcttgatgcggataaacag
ctggcgctgatttgtgaaagtgatttgctcggtgagcgcgtggcgcgtcgtcgtcaggac
aaccgacgctcgattaacaccgacacgctgatccgcaaccttgccgaactgcgccccggt
cagccggtggttcacgtcgagcacggcgtgggccgctatcttggcctgaccacgctggaa
accggcggcattaccgctgaatacctggttctgacctacgccggtgaagacaaactgtac
gttccggtgtcttccctgcatctgatcagccgttacgccggtggcgcggatgaaagtgcg
ccgctgcataaactgggcggtgaagcctggtcgaaagcccgtcagaaagccgctgagaaa
gtgcgcgacgtagcggctgagctgctggatatctacgcccagcgcgaagccaaaaccggt
tttgccttcaaacatgataaagagcaataccagttgttctgtcaggcgtttccgtttgaa
accacaccagatcaggcgcaggccatcaacgccgttctcacggatatgacgcagccgctg
gcgatggatcgtctggtgtgcggtgatgtgggctttggtaaaaccgaagtggcaatgcgc
gcggccttcctcgcggtctcgaacaacaaacaggtcgcggttctggtgcccaccacgctg
ctggcgcaacagcatttcgataacttccgcgaccgcttcgccagctggccagtgcgcatt
gaaatgatgtcccgtttccgcagcgccaaagaacaaaatgtggtgcttgccgatgccgta
gaaggcaaagtcgacatcattatcggtacgcataaattgctgcaaaccgatttgcgctgg
aaagacctcggcctgctgattgtcgatgaagaacaccgcttcggcgtgcgtcataaagag
cgtatcaaggcgatgcgcgcggacgtcgatattctgaccctgaccgccacgccgattccg
cgcacgctgaatatggcgatgagcgggatgcgagatttgtcgattattgccacaccaccg
gcgcgccgtatggcggtcaaaaccttcgtgcgtgagtacgacagtctggtcattcgggaa
gccatcctgcgtgaaattctgcgcggcgggcaggtttactacttatttaacgatgttgaa
aatatcgaaaaagccacgcaacgtctggcggagctggtgccggaagcacgtattgccatc
ggccacggccagatgcgcgaacgcgacctcgaacgcgtgatgaatgatttccaccatcag
cgtttcaacgtgctggtgtgtaccacaatcattgaaaccggtatcgatattccgacggcg
aacaccatcattattgagcgcgcagaccacttcgggctggcgcagttgcatcagttgcgt
ggccgcgtcgggcgttcgcatcatcaggcgtatgcctatttgctgacgccgccgcccaaa
gcgatgtcaacggatgcgcataaacgcctggaagccatcgcgtcgctcgaagatctgggt
gccggtttcgcgctggcaacgcacgacctggaaatccgcggtgccggtgaactgctcggc
gaaggccagagcgggcagatgaccagtatcggcttctcgctgtacatggaactgctggaa
aacgccgtcgaagccctgaaagaaggccgcgagccgtcgctggaagatctgaccaccagc
cagaccgaagtggaaatgcgcatgcctgcgctgttgccggaagatttcattcctgacgtc
aacacgcgtctgtcgctgtacaagcgtatcgccagtgccaaaaccgaaggcgagctggat
gaactgcgcgtcgagctgattgaccgtttcggcacgctgccggacgctgcgcgtaatctg
ttgcagattgccgtgctgcgcctgaacgcgaaaacgctgggcatcaaacgtattgaaggc
aacgagcgtggcggattcattgagtttggcgataaaaaccgcgtggatccgggcttcctg
attggccttctgcagaaacagccacaggtttatcgtcttgatggtccgaccaaactgaag
tttatgctcgatctcactgaccggccaaaacgcctgaagtttgtcggcgacatgctcggg
gagtttgcagagcatttgatctga
DBGET
integrated database retrieval system
