Rahnella sikkimica: BV494_09760
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Entry
BV494_09760 CDS
T05331
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rox
Rahnella sikkimica
Pathway
rox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV494_09760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rox03019
]
BV494_09760
03009 Ribosome biogenesis [BR:
rox03009
]
BV494_09760
Enzymes [BR:
rox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BV494_09760
Messenger RNA biogenesis [BR:
rox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BV494_09760
Ribosome biogenesis [BR:
rox03009
]
Prokaryotic type
rRNA processing factors
BV494_09760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AVF35204
UniProt:
A0A2L1UQJ7
LinkDB
All DBs
Position
2142285..2145521
Genome browser
AA seq
1078 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLTFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYHVLRVRKGEEISALSYLLPQIHEAEMLQPSEELPTERRRPEQPALAAFALQSEAPP
SSFEQETAVEEPAKPRTATVNAPAAPVAEKSGFVSRLLSGLKSLFAPEPQQEIKPVEAPK
ETEATETENRRGNERRNQRRQGGRRDRNGERGERTDRGNRGEGRENNRDNRGESRDNREN
NREQRDDQRRNRRPQEPVVNEVPSEDVETAPREEQQQPRRERSRRRSEDKRKTQTEEKIQ
DAVVEEQIAAPVPEETDQEDRQPAQRRQRRQLTQKVRFESEEVDHEAEAAAQLLITGTRP
AAPAVVEQAPVETETLNAAEGDENSNDNNRENGMPRRSRRSPRHLRVSGQRRRRYRDERY
PTQSPMPLSGAFVSPEMASGKVWITYPVAQATEQQFAETEAPEVLTQQVEIAQANTPELN
ETADVEAVPVVETVQQDASAAEEDVVPEIAQPVAEEPVLVEPETAEPVEETPRVEVAPQA
QAPVVAEPEVQAPVAAEPEINVEPVAPVQHVAETAPEVKAPVHAEPVVSEAVVAEPRFKH
HATAPMTKAPAPQYVQEQARQSDWVRPEFGFDGKGSAGGHAAVSTATAPATKPDMPSE
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgcgactcagcaagaagagttgcgcgttgccttggtagat
ggacagcgactgtatgatttggatattgaaagtccgggccatgagcagaaaaaagcaaac
atttacaaaggtaaaatcacccgcattgaaccaagtctggaagcggcattcgtagattac
ggtgcggaaaggcatggtttcctccctctgaaagaaatttcccgcgaatatttccctagt
aactattcctctcatggccgcccgaacatcaaagatgtgttgcgcgaaggccaggaagta
atcgttcaggttgataaagaagagcgtggaaataaaggcgcagcgctgacgacgtttatc
agcctggccggtagttatctggttctgatgccaaacaatccacgtgcagggggaatttcc
cgccgtattgaaggcgatgaccgtacagaactgaaagaagcactgtcttcgctgcaattg
cctgatggcatgggtctgattgttcgtaccgctggcgtcggcaaatctgctgaagctctg
cagtgggacctgactttccgcctgaagcattgggatgccatcaaaaaagccgctgaaggc
cgccctgcacctttcctgatccatcaggaaagtaatgttatcgtccgcgcattccgtgac
tatctgcgcccggacatcggcgaaatcctcatcgataacccgaaagttcttgaactggca
aaagagcacatcgctgcacttggccgtcctgatttcagcagcaaaattaagccttacgtc
ggtgaaattccgctgttcagccattatcagattgaatctcagattgaatccgctttccag
cgtgaagtgcgtctgccttccggtggctcgattgttatcgacagcacagaagccctgaca
gctatcgacatcaactccgcacgcgcaacacgcggtggcgatatcgaagaaaccgcattc
aataccaacctggaagcggcagatgaaattgcccgccagttacgcctgcgtgacctcggc
ggtttgattgttatcgacttcatcgatatgacaccagttcgccaccagcgtgaagtggaa
aaccgtctgcgtgatgccgttcgtcaggaccgtgcacgtattcaaatcggccgcatttct
cgttttggtttgcttgaaatgtcccgtcagcgcctcagtccgtcattgggtgaatcaacg
caccacatctgtccgcgttgtgcaggtacaggtacggttcgtgataacgaatccctttcg
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaataccaaagaagttcat
gcgatcgttccggtccctattgcttcttacctgctgaacgaaaaacgtgaatcggtgaat
gccatcgaaaaacgtcagggcggcgtgcgtgcagtgatcgtaccaaacgatcagatgcaa
accccgcattaccacgttctgcgcgttcgcaaaggcgaagaaatctctgcactgagctat
ctgttgccgcaaattcacgaagcagaaatgctgcaaccttctgaagagttgcccactgag
cgtcgtcgccctgagcaacctgctctggcagcgtttgccctgcaaagtgaagcgccaccg
tccagctttgagcaagaaactgctgttgaagaaccggctaaaccccgtactgcaacagtg
aatgctccggctgcgccagtggctgaaaaatctggttttgttagccgtctgctgagcggg
ctgaaaagcttgtttgcaccagagccgcagcaggaaattaaacctgttgaagcgccgaag
gaaactgaagctactgaaacagaaaatcgtcgcggcaacgaacgccgtaaccagcgtcgt
cagggcggacgtcgtgatcgcaatggggaacgtggcgagcgtactgaccgtggcaatcgt
ggcgaaggtcgtgagaacaatcgtgataatcgcggtgaaagccgtgacaaccgcgaaaat
aatcgcgagcagcgtgatgatcaacgccgcaaccgccgcccccaggaaccggttgttaat
gaagtccctagcgaagatgttgaaactgcaccacgtgaagagcagcagcaacctcgtcgt
gagcgttcacgccgtcgttcagaagataagcgcaaaacacagactgaagagaaaattcag
gatgctgttgttgaagagcaaatcgccgcgccagtccctgaagaaacggatcaggaagat
cgtcagcccgctcagcgtcgccagcgtcgtcagctcacgcagaaagttcgcttcgaatca
gaagaagtcgatcacgaagctgaagctgctgcacagttgctgatcaccggtactcgtcct
gcggctccggcagtggttgaacaggcacctgttgaaactgaaacgttgaatgcagcggaa
ggtgacgagaattcgaacgacaacaaccgcgaaaacggtatgccgcgtcgctcacgtcgt
tctccacgccatctgcgcgtaagcggtcagcgtcgtcgccgttaccgtgatgagcgttac
ccgactcagtcgccaatgcctctgtccggtgcatttgtttctccggaaatggcgtcaggt
aaagtctggatcacttatccggtagctcaggctactgaacagcaatttgcagaaactgaa
gcaccggaagttctgacacaacaagttgaaatcgctcaggccaatacgccggaactgaac
gaaacagctgacgttgaagcagtacctgttgtagaaacagttcagcaggacgcgtcagca
gctgaagaagacgttgtgccggaaattgcacaacctgttgctgaagagcctgttctggtt
gaacctgaaactgcagagccagttgaagagacaccgcgtgttgaagttgcaccgcaagca
caggcacctgttgtcgctgaacctgaagttcaggcaccggttgcagcagaaccagaaatc
aacgttgagcctgttgctccggtacaacatgttgcagaaaccgcaccagaggttaaagcc
cctgtccatgctgaacctgttgtctctgaagctgttgttgctgaaccgcgctttaagcat
catgccactgcaccgatgaccaaagcgccagcacctcagtatgttcaggagcaagcccgc
caaagcgactgggttcgtcctgaattcggcttcgatggcaaaggttctgccggtggtcat
gcagcagtaagcactgcgactgcgccagcaaccaaacccgacatgccttctgagtaa
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