Rahnella sikkimica: BV494_10410
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Entry
BV494_10410 CDS
T05331
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rox
Rahnella sikkimica
Pathway
rox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV494_10410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rox03019
]
BV494_10410
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BV494_10410
Messenger RNA biogenesis [BR:
rox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV494_10410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
Shikimate_DH
UvrD-helicase
DUF6256
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVF35320
UniProt:
A0A2L1UQV1
LinkDB
All DBs
Position
complement(2269383..2270783)
Genome browser
AA seq
466 aa
AA seq
DB search
MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQML
KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASEQIEQTVHFVDKKRKKELLSQMI
GEGNWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLV
ATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAVSLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDLSIKAEPIINGRQGSGGGGRGAPRQGQRPGAPRSGAPRSGA
PRPGGSGQRAANGTSENRGSGENRPARSRPAHAGQRRTGTGGTGNK
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattccctcggcttaagtgccgaaattttgcgtgctgttgaagaacagggc
tatcgtgaacctacgcctattcagcgtcaggctatccctgttgtgctggaaggtcgtgac
ctgatggcgagcgcgcagaccggtaccggtaaaaccgctggttttacactgccgctgctg
aacatgctcagccataccaacgcgcaattcaaaggacgtcgcccggttcgtgcgctgatc
ctgaccccaacccgtgagctggcggcgcagattggcgaaaacgtccaggcttacagcaaa
tacctgaccctgcgttcgctggtcgtatttggtggtgtgagcatcaacccgcagatgttg
aaactgcgcggtggcgtggatgttctgatcgcaacgccgggtcgtttgctggatctggaa
catcagcgtgctgttgatttatcccaggtagaaattttagtgcttgatgaagctgaccgt
atgctggacatgggcttcatccacgacatccgtcgcgtgctggcgaaactgcctgccaag
cgtcagaacctgctgttctccgccaccttctccgatgagatcaaaggtctggcgagcaag
ttgctgactaacccggcttctgttgaagttgcgcgtcgcaacaccgcttctgagcaaatt
gaacagaccgttcactttgttgataagaaacgcaaaaaagaactgctgtcccagatgatc
ggcgaaggcaactggaaacaggtgctggtgttcaaccgtacaaaacacggtgccaaccat
ctggctgagcaactgaataaagacggcatcaccgccgctgcgattcatggcaataaaagt
cagggcgcgcgtacccgtgcactggccgatttcaaagctggttcagtccgtgtactggtc
gcaacggatatcgccgcgcgcggtctggatatcgatatgctgccgcacgtcgtgaactac
gaactgccaaacgtaccggaagattacgttcaccgtatcggccgtaccggccgtgcagaa
gccaccggcgaagcggtttctctggtgtgcgttgatgaacataaattgctgcgtgacatc
gagcgcctgctgaagcgtgaaattccacgcatcgcactgccgggttatgagccagatttg
agcatcaaagctgagccgatcatcaatggtcgccagggtagcggtggcggcggtcgtggc
gcaccacgtcagggccagcgtccgggcgcaccgcgctccggtgctccacgttcaggcgct
ccgcgtccgggcggtagtggtcagcgtgcggcaaacggcacgtctgaaaaccgcggttcc
ggcgaaaaccgtccggcacgttcgcgtcctgcacatgcaggccagcgtcgtaccggcacc
ggcggcaccggcaacaaataa
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