Rahnella sikkimica: BV494_12080
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Entry
BV494_12080 CDS
T05331
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
rox
Rahnella sikkimica
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_12080
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BV494_12080
Archaeal homologous recombinant proteins
BV494_12080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_21
nSTAND3
cobW
TsaE
GTP_EFTU
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVF35620
UniProt:
A0A2L1URR6
LinkDB
All DBs
Position
2616357..2619614
Genome browser
AA seq
1085 aa
AA seq
DB search
MKILSLRLKNLNSLEGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LNVTPSQNELMTRHTAESLAEVEFEVKGIGYRAFWSQRRAKNSPDGNLQAPKVELALLAD
GKILADKVRDKLDAIAELTGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTEI
YGRLSERVFEQHKEAKNQLDGLYQRMAGIELLSEEQRQAFETELAALNAQEIILSQQALQ
RQQDLNWLQQWQQVQQKHQQSQQQLTAAEQENLAAAPQLQQLARSEPAEKLRPLLSDRLR
CEKETQDLQQALTQLIQQQEQQAAQMTPLALALEQAKAARQKQTEEQRQLQTLMDEKVLP
LDSEIARWRKSLTDTQQTVSEVQKQASEHSATLAKITEEHQKLESQSQQHQAKHTTLTGA
LQAAQQRLGELEKLHPLAALQKRQSELTQLRPVRQQLFSLAQIFPQLDSRVRQQHQDFAL
NQTAISEEEERLGKIRLQCQKQLEHLNDVKARLKSEELIVSLTAERANLQSGQACPLCGS
TSHPAIESYQEIKPSETAQRVEKMQLEFDATKASGIELAAKIKSLKELQLRLQTQLEQDQ
QQLNAHLENWQKLSAPHGLTFTLMDGPDIQQWLASCDQEEQQTQEHLRQHEQLARALQQA
KDALSEAVSEQQKVQQQSALLAERFTLTQQNQAKSQEQLERLQTQYADGEKTLKDLTAQR
TELFGDRQVTQVREHLHQQQQAAEKAVSEAETALHRAQELRDTLAGQLASTQRQHQQAMA
RLQQAQTDWQKALAASEFADEDAVKLALLDDALRQQLRQRKDQLQKLLAQAQALLSDAKE
TLEKHRLARPAHLSESESDLTVLMAEQESLSQSLKALQQRTGEVSNQLKFDKERSGSQQA
LIAQIAQAQLTCDDWGYLNQMIGSSDGAKFRKFAQGLTLDHLVYLANRQLEKLHGRYLLQ
RKTSDALELQVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSDKTRIDSLFLDEG
FGTLDADTLDTALDALDSLNASGKTIGVISHVEAMKDRIPVQIKVTKVNGLGVSRLSSEF
KVPSQ
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtctgcgtttaaaaaacctgaactcgctggaaggcgaatggaaaatc
gacttcaccgctgagccttttgccagcaacggattatttgccatcacaggcccgaccggc
gcggggaaaaccaccctgctcgacgccatctgtctggcgctgtatcaccagacaccgcgc
ctgaacgtcacgccaagccagaatgaactgatgacgcggcacaccgccgaatcgctggcg
gaagtggagtttgaggtcaaaggcattggctaccgcgcgttctggagccagcgtcgtgcc
aaaaactcgccggacggcaatttgcaggcgcccaaagtagaactggcgctgctggctgac
ggcaaaattctggccgacaaagtgcgcgataaactcgatgctattgctgaactgaccggg
ctggatttcggccgtttcaccaaatcgatgatgctttcacaaggccagttcgccgcgttc
ctgaatgccgatgccaacgaccgcgcggaattgctggaagaactcaccggcaccgaaatc
tacgggcggctttctgaacgcgtgtttgaacaacataaagaagccaaaaatcagctcgac
ggtttgtatcagcgcatggcgggtatcgagttgctcagcgaagagcagcgtcaggcgttc
gaaacggaactggccgcgctgaacgcgcaggaaattatcctcagccagcaggcgctgcaa
cgccagcaagatctgaactggctgcaacaatggcagcaggtgcagcaaaagcatcagcaa
tctcagcagcaactgacggcggcggagcaggaaaacctcgccgctgcgccgcagttgcag
caactcgcgcgcagtgaaccggctgaaaagctgcgtccgctgctcagcgaccggttgcgc
tgtgagaaagaaacgcaggatttacagcaggcacttacacagctgattcagcagcaggaa
caacaggcggcgcagatgacgccgctggctttggcgctggaacaggcgaaagccgcacgt
cagaaacagaccgaagaacagcgccagctacagacgctgatggacgaaaaagttctgccg
ctggatagcgaaattgcacggtggcgcaaatcactgactgacacgcagcagaccgtcagt
gaagtacagaaacaggccagtgagcacagcgcgacgctggcgaaaatcaccgaagagcac
cagaaactggagtcacagagtcagcaacatcaggcgaaacacaccacgctgaccggtgcg
cttcaggctgcgcaacagcgtctgggcgaactggaaaaactgcatccgctggcggcgttg
caaaaacggcaatctgaactgacgcagttgcgtccagtgcgtcagcagctgttttcactc
gcacaaattttccctcagctcgactcacgtgtccgtcagcagcatcaggattttgcgctg
aatcagacggcaatttctgaggaagaagaacgccttggcaaaatccgtctgcaatgtcag
aaacagctcgaacatctgaatgatgttaaagcgcggctgaaaagcgaggaactgatcgtc
agcctgaccgcagaacgcgcaaatctgcaaagcggccaggcctgcccgctgtgcggttcc
acctcgcatccggcgattgaaagttatcaggagatcaaaccgtctgaaacggcgcagcgt
gttgagaaaatgcagctggaatttgatgcgacgaaagccagcggaatcgaactggcggcg
aaaattaaaagcctgaaagaactgcaattgcgcctgcaaacgcagcttgagcaggaccag
cagcagctgaacgcgcatctcgaaaactggcagaaactcagtgctccacatggtctgaca
ttcacgctgatggatgggccggacattcagcaatggctggcgtcatgcgatcaggaagaa
cagcaaacgcaggaacacctccgccagcatgaacagctggcgcgtgcgctgcaacaggcg
aaagacgccctcagcgaagccgtcagcgaacaacaaaaagtccagcagcaaagcgcattg
ctggcggagcgttttacgctgacgcagcaaaaccaggcgaaatctcaggaacaacttgaa
cgtctgcaaacccagtatgcggatggtgagaaaacgctgaaagacctgacggcgcaacgc
actgaactcttcggcgaccgtcaggtcacgcaggttcgcgagcacttgcatcagcaacaa
caggccgccgaaaaagcagtcagcgaagccgagacggccctgcaccgtgcgcaggaactt
cgcgacacactggccggtcagcttgccagcacgcaacggcaacatcagcaggccatggcg
cgtctgcaacaggcgcaaacagactggcaaaaggcgctggccgccagcgagtttgcggat
gaagatgcagtgaaactggccctgctcgacgatgcattacgccagcaactccggcagcgt
aaagaccagttacagaaactactggcgcaggctcaggcgctgttaagcgacgcgaaagag
acattagagaaacaccggctggcacgccctgcgcatctgagtgaaagcgaaagcgatctc
acggtgctgatggcagagcaggaatcactgtcacaaagcctgaaagcgctgcaacagcgt
accggcgaagtgagtaatcagcttaaattcgacaaggaacgcagcggcagccagcaggcg
ttaatcgcgcagattgcgcaggcgcagctgacctgtgatgactggggatatctcaatcag
atgattggctccagcgatggcgcaaaattccgtaagttcgcgcagggactgacgctggat
catctggtgtatctggcgaaccgtcagctggaaaaactgcatggccgctacctgttgcag
cgcaaaaccagcgacgcgctggagttgcaggttgtcgatacctggcaggccgacgccgtg
cgtgatacccgcacgttatccggcggcgagagtttcctggtcagtctggcgctggcgctg
gcgttgtcagatctggtgagtgataaaacccgcatcgattcgctgttcctcgacgaaggt
ttcggtacgctcgacgccgacacgctggacaccgcgctggacgccctcgacagcctgaac
gcctccggtaaaactattggcgtgatcagccacgttgaagcgatgaaagaccgcattccg
gtgcaaatcaaagtgaccaaggtgaacgggctgggcgtcagccgcctgagcagtgaattt
aaagtcccgtcgcagtaa
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